Gm31416 Gene Detail

Summary

• Symbol
  Gm31416
• Name
  predicted gene, 31416

• Feature Type
  lncRNA gene
• IDs
  MGI:5590575
  NCBI Gene: 102633633
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr10:66666297-66747310 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  2873 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5590575	lncRNA gene	Chr10:66622339-66747315 (-)
129S1/SvImJ	ENSMUSG00200017580	lncRNA gene	Chr10:63359716-63443521 (-)
A/J	ENSMUSG00195006239	lncRNA gene	Chr10:63658413-63737697 (-)
AKR/J	ENSMUSG00220028113	lncRNA gene	Chr10:63327260-63406534 (-)
BALB/cJ	ENSMUSG00180007989	lncRNA gene	Chr10:63692943-63772229 (-)
C3H/HeJ	ENSMUSG00175013527	lncRNA gene	Chr10:63527641-63606909 (-)
C57BL/6NJ	ENSMUSG00215004056	lncRNA gene	Chr10:63302501-63381781 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005026755	lncRNA gene	Chr10:63262996-63342232 (-)
CBA/J	ENSMUSG00210009691	lncRNA gene	Chr10:63407471-63486739 (-)
DBA/2J	ENSMUSG00185020252	lncRNA gene	Chr10:63770232-63849512 (-)
FVB/NJ	ENSMUSG00205008020	lncRNA gene	Chr10:63473015-63552937 (-)
JF1/MsJ	ENSUMUG00000021012	lncRNA gene	Chr10:64967742-65048749 (-)
LP/J	ENSMUSG00230020073	lncRNA gene	Chr10:65536492-65615315 (-)
NOD/ShiLtJ	ENSMUSG00190008158	lncRNA gene	Chr10:63767992-63847420 (-)
NZO/HlLtJ	ENSMUSG00225045267	lncRNA gene	Chr10:69824971-69904231 (-)
PWK/PhJ	ENSLUMG00010008175	lncRNA gene	Chr10:63359291-63440317 (-)
SPRET/EiJ	ENSMSPG00010022865	lncRNA gene	Chr10:65018088-65096098 (-)
WSB/EiJ	ENSIUOG00005033839	lncRNA gene	Chr10:63294266-63373344 (-)

Homology

• Gene Tree
  Gm31416
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  9 phenotype references
  

• All Mutations and Alleles
  51
• Chemically induced (other)
  1
• Gene trapped
  49
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm31416
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  56
• RefSeq
  6

• Ensembl
  ENSMUSG00000120434 (Evidence)
• NCBI Gene
  102633633

Representative Sequences			Length	Strain/Species
genomic	102633633	NCBI Gene Model | MGI Sequence Detail	81014	C57BL/6J
transcript	XR_004936398	RefSeq | MGI Sequence Detail	3329	C57BL/6J

References

• Summaries
  All 12

  Phenotypes 9
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm31416:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr97932	Chr10:66747248-66747262 (-)	55 bp
Tssr97931	Chr10:66747182-66747213 (-)	112 bp