Gm31415 Gene Detail

Summary

• Symbol
  Gm31415
• Name
  predicted gene, 31415

• Feature Type
  lncRNA gene
• IDs
  MGI:5590574
  NCBI Gene: 102633632
• Alliance
  genome feature page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr3:49016800-49051151 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1225 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5590574	lncRNA gene	Chr3:49016786-49190392 (+)
129S1/SvImJ	ENSMUSG00200000381	lncRNA gene	Chr3:45836638-45859512 (+)
A/J	ENSMUSG00195000759	lncRNA gene	Chr3:45829182-45845879 (+)
AKR/J	ENSMUSG00220015922	lncRNA gene	Chr3:45860437-45877244 (+)
BALB/cJ	ENSMUSG00180000391	lncRNA gene	Chr3:45906616-45923309 (+)
C3H/HeJ	ENSMUSG00175002189	lncRNA gene	Chr3:45747219-45763913 (+)
C57BL/6NJ	ENSMUSG00215000620	lncRNA gene	Chr3:46144887-46167772 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005620	lincRNA gene	Chr3:42935237-42953360 (+)
CAST/EiJ	ENSTCUG00005009725	lncRNA gene	Chr3:45588229-45604884 (+)
CBA/J	ENSMUSG00210000800	lncRNA gene	Chr3:45860316-45876999 (+)
DBA/2J	ENSMUSG00185000388	lncRNA gene	Chr3:46079255-46096059 (+)
FVB/NJ	ENSMUSG00205010068	lncRNA gene	Chr3:45068503-45085191 (+)
JF1/MsJ	ENSUMUG00000029318	lncRNA gene	Chr3:45486987-45509888 (+)
LP/J	ENSMUSG00230000453	lncRNA gene	Chr3:48013757-48036652 (+)
NOD/ShiLtJ	ENSMUSG00190000267	lncRNA gene	Chr3:46207379-46224169 (+)
NZO/HlLtJ	ENSMUSG00225000674	lncRNA gene	Chr3:50638733-50661617 (+)
PWK/PhJ	ENSLUMG00010010061	lncRNA gene	Chr3:45630103-45646773 (+)
SPRET/EiJ	ENSMSPG00010007536	lncRNA gene	Chr3:46262455-46280187 (+)
WSB/EiJ	ENSIUOG00005000448	lncRNA gene	Chr3:46025053-46041742 (+)

Homology

• Gene Tree
  Gm31415
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  8 phenotype references
  

• All Mutations and Alleles
  3
• Gene trapped
  1
• Radiation induced
  2
• Genomic Mutations
  2 involving Gm31415
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  33
• RefSeq
  3

• Ensembl
  ENSMUSG00000102263 (Evidence)
• NCBI Gene
  102633632

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000102263	Ensembl Gene Model | MGI Sequence Detail	34352	C57BL/6J
transcript	ENSMUST00000288454	Ensembl | MGI Sequence Detail	836	Not Applicable

References

• Summaries
  All 12

  Diseases 1

  Phenotypes 8
• Earliest
  J:64276 Lyon MF, et al., Dose-response curves for radiation-induced gene mutations in mouse oocytes and their interpretation. Mutat Res. 1979 Nov;63(1):161-73
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

TSS for Gm31415:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr29016	Chr3:49016804-49016819 (+)	12 bp
Tssr29017	Chr3:49016871-49016881 (+)	76 bp
Tssr29018	Chr3:49016883-49016891 (+)	87 bp
Tssr29019	Chr3:49016897-49016909 (+)	103 bp