Gm31401 Gene Detail

Summary

• Symbol
  Gm31401
• Name
  predicted gene, 31401

• Feature Type
  lncRNA gene
• IDs
  MGI:5590560
  NCBI Gene: 102633617
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr8:8132540-8143215 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  311 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5590560	lncRNA gene	Chr8:8116666-8143357 (+)
129S1/SvImJ	ENSMUSG00200013052	lncRNA gene	Chr8:4990047-5014623 (+)
A/J	ENSMUSG00195010602	lncRNA gene	Chr8:5354109-5380799 (+)
AKR/J	ENSMUSG00220011373	lncRNA gene	Chr8:5079669-5106358 (+)
BALB/cJ	ENSMUSG00180004871	lncRNA gene	Chr8:4992983-5019857 (+)
C3H/HeJ	ENSMUSG00175008525	lncRNA gene	Chr8:5133991-5160681 (+)
C57BL/6NJ	ENSMUSG00215010973	lncRNA gene	Chr8:5027634-5054324 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005020714	lncRNA gene	Chr8:5000904-5025482 (+)
CBA/J	ENSMUSG00210011326	lncRNA gene	Chr8:4987313-5014002 (+)
DBA/2J	ENSMUSG00185003958	lncRNA gene	Chr8:5122116-5148805 (+)
FVB/NJ	ENSMUSG00205005808	lncRNA gene	Chr8:5053661-5080496 (+)
JF1/MsJ	ENSUMUG00000043051	lncRNA gene	Chr8:5110043-5134619 (+)
LP/J	ENSMUSG00230008146	lncRNA gene	Chr8:7302236-7329070 (+)
NOD/ShiLtJ	ENSMUSG00190011999	lncRNA gene	Chr8:5105215-5131904 (+)
NZO/HlLtJ	ENSMUSG00225019930	lncRNA gene	Chr8:15159146-15185980 (+)
PWK/PhJ	ENSLUMG00010011223	lncRNA gene	Chr8:5030696-5055276 (+)
SPRET/EiJ	ENSMSPG00010018504	lncRNA gene	Chr8:5097681-5122274 (+)
WSB/EiJ	ENSIUOG00005005687	lncRNA gene	Chr8:4999896-5026731 (+)

Homology

• Gene Tree
  Gm31401
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000109566 (Evidence)
• NCBI Gene
  102633617

Representative Sequences			Length	Strain/Species
genomic	102633617	NCBI Gene Model | MGI Sequence Detail	10676	C57BL/6J
transcript	XR_378695	RefSeq | MGI Sequence Detail	219	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;