Gm31332 Pseudogene Detail

Summary

• Symbol
  Gm31332
• Name
  predicted gene, 31332

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:5590491
  NCBI Gene: 102633525
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr12:3488515-3488889 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  93 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5590491	pseudogene	Chr12:3486492-3492403 (+)
129S1/SvImJ	ENSMUSG00200024103	pseudogene	Chr12:439399-439773 (+)
A/J	ENSMUSG00195016033	pseudogene	Chr12:469394-469768 (+)
AKR/J	ENSMUSG00220031399	pseudogene	Chr12:464652-465026 (+)
BALB/cJ	ENSMUSG00180015542	pseudogene	Chr12:465840-466214 (+)
C3H/HeJ	ENSMUSG00175010007	pseudogene	Chr12:442113-442487 (+)
C57BL/6NJ	ENSMUSG00215023235	pseudogene	Chr12:396622-396996 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005023708	pseudogene	Chr12:266276-266643 (+)
CBA/J	ENSMUSG00210013811	pseudogene	Chr12:461875-462249 (+)
DBA/2J	ENSMUSG00185021845	pseudogene	Chr12:448781-449155 (+)
FVB/NJ	ENSMUSG00205003354	pseudogene	Chr12:246448-246822 (+)
JF1/MsJ	ENSUMUG00000037126	pseudogene	Chr12:425322-425697 (+)
LP/J	ENSMUSG00230012000	pseudogene	Chr12:2276951-2277325 (+)
NOD/ShiLtJ	ENSMUSG00190008639	pseudogene	Chr12:1688402-1688776 (+)
NZO/HlLtJ	ENSMUSG00225019944	pseudogene	Chr12:4327512-4327886 (+)
PWK/PhJ	ENSLUMG00010017069	pseudogene	Chr12:251774-252149 (+)
SPRET/EiJ	ENSMSPG00010005057	pseudogene	Chr12:652463-652833 (+)
WSB/EiJ	ENSIUOG00005002329	pseudogene	Chr12:447592-447966 (+)

Homology

• Gene Tree
  Gm31332
  

Expression

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  2

• Ensembl
  ENSMUSG00000118499 (Evidence)
• NCBI Gene
  102633525

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118499	Ensembl Gene Model | MGI Sequence Detail	375	C57BL/6J
transcript	ENSMUST00000239031	Ensembl | MGI Sequence Detail	375	Not Applicable
polypeptide	XP_036013666	RefSeq | MGI Sequence Detail	164	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm31332:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr112488	Chr12:3488355-3488358 (+)	-158 bp