Gm31308 Gene Detail

Summary

• Symbol
  Gm31308
• Name
  predicted gene, 31308

• Feature Type
  lncRNA gene
• IDs
  MGI:5590467
  NCBI Gene: 102633496
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr12:83046051-83051271 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  216 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5590467	lncRNA gene	Chr12:83046051-83051350 (-)
129S1/SvImJ	ENSMUSG00200051604	lncRNA gene	Chr12:75053100-75058343 (-)
A/J	ENSMUSG00195033610	lncRNA gene	Chr12:77670681-77675924 (-)
AKR/J	ENSMUSG00220049064	lncRNA gene	Chr12:75466093-75471336 (-)
BALB/cJ	ENSMUSG00180026725	lncRNA gene	Chr12:76713065-76718308 (-)
C3H/HeJ	ENSMUSG00175043243	lncRNA gene	Chr12:79802587-79807830 (-)
C57BL/6NJ	ENSMUSG00215045690	lncRNA gene	Chr12:76020246-76025489 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005031759	lncRNA gene	Chr12:75970230-75975483 (-)
CBA/J	ENSMUSG00210047177	lncRNA gene	Chr12:76216856-76222099 (-)
DBA/2J	ENSMUSG00185045131	lncRNA gene	Chr12:78073345-78078588 (-)
FVB/NJ	ENSMUSG00205043086	lncRNA gene	Chr12:75884196-75889439 (-)
JF1/MsJ	ENSUMUG00000052558	lncRNA gene	Chr12:82072355-82077558 (-)
LP/J	ENSMUSG00230047129	lncRNA gene	Chr12:85135918-85141161 (-)
NOD/ShiLtJ	ENSMUSG00190049768	lncRNA gene	Chr12:75273246-75278489 (-)
NZO/HlLtJ	ENSMUSG00225053435	lncRNA gene	Chr12:87176174-87181417 (-)
PWK/PhJ	ENSLUMG00010029612	lncRNA gene	Chr12:76073790-76079103 (-)
SPRET/EiJ	ENSMSPG00010020051	lncRNA gene	Chr12:77880201-77885404 (-)
WSB/EiJ	ENSIUOG00005045133	lncRNA gene	Chr12:75898979-75904224 (-)

Homology

• Gene Tree
  Gm31308
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm31308
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000120391 (Evidence)
• NCBI Gene
  102633496

Representative Sequences			Length	Strain/Species
genomic	102633496	NCBI Gene Model | MGI Sequence Detail	5221	C57BL/6J
transcript	NR_175335	RefSeq | MGI Sequence Detail	504	ZRU/MplStud

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm31308:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr116945	Chr12:83051270-83051291 (-)	-10 bp