Gm31253 Gene Detail

Summary

• Symbol
  Gm31253
• Name
  predicted gene, 31253

• Feature Type
  lncRNA gene
• IDs
  MGI:5590412
  NCBI Gene: 102633422
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr15:80013285-80022035 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  361 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5590412	lncRNA gene	Chr15:80013285-80032460 (-)
129S1/SvImJ	ENSMUSG00200053980	lncRNA gene	Chr15:77119383-77122904 (-)
A/J	ENSMUSG00195051490	lncRNA gene	Chr15:77064902-77068423 (-)
AKR/J	ENSMUSG00220053189	lncRNA gene	Chr15:77108039-77111560 (-)
BALB/cJ	ENSMUSG00180053321	lncRNA gene	Chr15:76941960-76945481 (-)
C3H/HeJ	ENSMUSG00175052878	lncRNA gene	Chr15:77253079-77256600 (-)
C57BL/6NJ	ENSMUSG00215053655	lncRNA gene	Chr15:77025162-77028683 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005048473	lncRNA gene	Chr15:76552451-76555850 (-)
CBA/J	ENSMUSG00210048962	lncRNA gene	Chr15:77028217-77031738 (-)
DBA/2J	ENSMUSG00185051781	lncRNA gene	Chr15:77038192-77041596 (-)
FVB/NJ	ENSMUSG00205051703	lncRNA gene	Chr15:76765461-76768982 (-)
JF1/MsJ	ENSUMUG00000056833	lncRNA gene	Chr15:76614418-76617996 (-)
LP/J	ENSMUSG00230052664	lncRNA gene	Chr15:80367758-80371279 (-)
NOD/ShiLtJ	ENSMUSG00190053969	lncRNA gene	Chr15:77045267-77048788 (-)
NZO/HlLtJ	ENSMUSG00225053490	lncRNA gene	Chr15:80703694-80707097 (-)
PWK/PhJ	ENSLUMG00010053121	lncRNA gene	Chr15:76835004-76838610 (-)
SPRET/EiJ	ENSMSPG00010051527	lncRNA gene	Chr15:78499786-78503300 (-)
WSB/EiJ	ENSIUOG00005050887	lncRNA gene	Chr15:77111091-77114497 (-)

Homology

• Gene Tree
  Gm31253
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  22
• Chemically induced (other)
  1
• Gene trapped
  21
• Genomic Mutations
  1 involving Gm31253
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  36
• RefSeq
  1

• Ensembl
  ENSMUSG00000121045 (Evidence)
• NCBI Gene
  102633422

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121045	Ensembl Gene Model | MGI Sequence Detail	8751	C57BL/6J
transcript	ENSMUST00000246974	Ensembl | MGI Sequence Detail	1063	Not Applicable

References

• Summaries
  All 8

  Phenotypes 5
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm31253:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr135420	Chr15:80018238-80018261 (-)	3,785 bp