Gm31249 Gene Detail

Summary

• Symbol
  Gm31249
• Name
  predicted gene, 31249

• Feature Type
  lncRNA gene
• IDs
  MGI:5590408
  NCBI Gene: 102633417
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:72721000-72727005 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  259 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5590408	lncRNA gene	Chr6:72717187-72727005 (+)
129S1/SvImJ	ENSMUSG00200013210	lncRNA gene	Chr6:69625079-69631080 (+)
A/J	ENSMUSG00195047503	lncRNA gene	Chr6:69387334-69393337 (+)
AKR/J	ENSMUSG00220046575	lncRNA gene	Chr6:68367283-68373295 (+)
BALB/cJ	ENSMUSG00180038441	lncRNA gene	Chr6:69742318-69748323 (+)
C3H/HeJ	ENSMUSG00175014588	lncRNA gene	Chr6:107672678-107678695 (-)
C57BL/6NJ	ENSMUSG00215043287	lncRNA gene	Chr6:69715070-69721070 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005036568	lncRNA gene	Chr6:69874269-69880272 (+)
CBA/J	ENSMUSG00210046332	lncRNA gene	Chr6:69571998-69578015 (+)
DBA/2J	ENSMUSG00185044719	lncRNA gene	Chr6:70132125-70138142 (+)
FVB/NJ	ENSMUSG00205034590	lncRNA gene	Chr6:68837830-68843831 (+)
JF1/MsJ	ENSUMUG00000042943	lncRNA gene	Chr6:69184680-69190687 (+)
LP/J	ENSMUSG00230008208	lncRNA gene	Chr6:71220044-71226045 (+)
NOD/ShiLtJ	ENSMUSG00190040795	lncRNA gene	Chr6:69116570-69122574 (+)
NZO/HlLtJ	ENSMUSG00225007029	lncRNA gene	Chr6:73193971-73199972 (+)
PWK/PhJ	ENSLUMG00010022115	lncRNA gene	Chr6:68593273-68599254 (+)
SPRET/EiJ	ENSMSPG00010026214	lncRNA gene	Chr6:70421418-70427462 (+)
WSB/EiJ	ENSIUOG00005027196	lncRNA gene	Chr6:70121698-70127727 (+)

Homology

• Gene Tree
  Gm31249
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  1
• Spontaneous
  1
• Genomic Mutations
  1 involving Gm31249
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000121161 (Evidence)
• NCBI Gene
  102633417

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121161	Ensembl Gene Model | MGI Sequence Detail	6006	C57BL/6J
transcript	ENSMUST00000247353	Ensembl | MGI Sequence Detail	1710	Not Applicable

References

• Summaries
  All 9

  Phenotypes 6
• Earliest
  J:87486 Akeson EC, Chromosomal inversion discovered in C3H/HeJ mice. JAX Notes. 2003;491:15
• Latest
  J:386463 Rias E, et al., Protocol for isolation of total RNA from mouse whole cochlea using organic solvents. STAR Protoc. 2026 Mar 20;7(1):104376

TSS for Gm31249:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr57163	Chr6:72721003-72721041 (+)	22 bp