Gm31224 Gene Detail

Summary

• Symbol
  Gm31224
• Name
  predicted gene, 31224
• Synonyms
  Gm45811

• Feature Type
  lncRNA gene
• IDs
  MGI:5590383
  NCBI Gene: 102633389
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr8:95840065-95856237 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  337 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5590383	lncRNA gene	Chr8:95840046-95856239 (+)
129S1/SvImJ	ENSMUSG00200017390	lncRNA gene	Chr8:90201340-90210953 (+)
A/J	ENSMUSG00195028976	lncRNA gene	Chr8:90553840-90563426 (+)
AKR/J	ENSMUSG00220039880	lncRNA gene	Chr8:90590657-90600243 (+)
BALB/cJ	ENSMUSG00180004037	lncRNA gene	Chr8:90438250-90447861 (+)
C3H/HeJ	ENSMUSG00175002861	lncRNA gene	Chr8:90497031-90506617 (+)
C57BL/6NJ	ENSMUSG00215031543	lncRNA gene	Chr8:90112479-90128504 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005017956	lncRNA gene	Chr8:89959133-89968718 (+)
CBA/J	ENSMUSG00210015657	lncRNA gene	Chr8:90432129-90441724 (+)
DBA/2J	ENSMUSG00185024936	lncRNA gene	Chr8:96540983-96550581 (+)
FVB/NJ	ENSMUSG00205017312	lncRNA gene	Chr8:89525687-89535294 (+)
JF1/MsJ	ENSUMUG00000047865	lncRNA gene	Chr8:98892599-98902208 (+)
LP/J	ENSMUSG00230031655	lncRNA gene	Chr8:100194606-100204192 (+)
NOD/ShiLtJ	ENSMUSG00190013513	lncRNA gene	Chr8:90563796-90573399 (+)
NZO/HlLtJ	ENSMUSG00225011530	lncRNA gene	Chr8:103591270-103600889 (+)
PWK/PhJ	ENSLUMG00010045074	lncRNA gene	Chr8:90286029-90295580 (+)
SPRET/EiJ	ENSMSPG00010006580	lncRNA gene	Chr8:92291454-92301067 (+)
WSB/EiJ	ENSIUOG00005006076	lncRNA gene	Chr8:91267104-91276726 (+)

Homology

• Gene Tree
  Gm31224
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000110517 (Evidence)
• NCBI Gene
  102633389

Representative Sequences			Length	Strain/Species
genomic	102633389	NCBI Gene Model | MGI Sequence Detail	16173	C57BL/6J
transcript	XR_387938	RefSeq | MGI Sequence Detail	661	C57BL/6J

Other
Accession IDs

MGI:5804926

References

• Summaries
  All 5
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm31224:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr78977	Chr8:95840061-95840086 (+)	9 bp