Gm31181 Gene Detail

Summary

• Symbol
  Gm31181
• Name
  predicted gene, 31181

• Feature Type
  lncRNA gene
• IDs
  MGI:5590340
  NCBI Gene: 102633330
• Alliance
  genome feature page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr10:66533968-66541740 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  275 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5590340	lncRNA gene	Chr10:66533968-66541740 (+)
129S1/SvImJ	ENSMUSG00200017699	lncRNA gene	Chr10:63225830-63233553 (+)
A/J	ENSMUSG00195006001	lncRNA gene	Chr10:63524484-63532206 (+)
AKR/J	ENSMUSG00220030489	lncRNA gene	Chr10:63193317-63201037 (+)
BALB/cJ	ENSMUSG00180007852	lncRNA gene	Chr10:63559022-63566743 (+)
C3H/HeJ	ENSMUSG00175013119	lncRNA gene	Chr10:63393744-63401464 (+)
C57BL/6NJ	ENSMUSG00215004041	lncRNA gene	Chr10:63168565-63176287 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005027190	lncRNA gene	Chr10:63126634-63134023 (+)
CBA/J	ENSMUSG00210010064	lncRNA gene	Chr10:63273585-63281307 (+)
DBA/2J	ENSMUSG00185021120	lncRNA gene	Chr10:63636331-63644051 (+)
FVB/NJ	ENSMUSG00205007950	lncRNA gene	Chr10:63332589-63340315 (+)
JF1/MsJ	ENSUMUG00000024045	lncRNA gene	Chr10:64843237-64850613 (+)
LP/J	ENSMUSG00230020423	lncRNA gene	Chr10:65401478-65409224 (+)
NOD/ShiLtJ	ENSMUSG00190008220	lncRNA gene	Chr10:63634077-63641800 (+)
NZO/HlLtJ	ENSMUSG00225045377	lncRNA gene	Chr10:69691068-69698788 (+)
PWK/PhJ	ENSLUMG00010008252	lncRNA gene	Chr10:63233295-63240657 (+)
SPRET/EiJ	ENSMSPG00010023843	lncRNA gene	Chr10:64881035-64888335 (+)
WSB/EiJ	ENSIUOG00005034944	lncRNA gene	Chr10:63167237-63174964 (+)

Homology

• Gene Tree
  Gm31181
  

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  31
• RefSeq
  1

• Ensembl
  ENSMUSG00000112202 (Evidence)
• NCBI Gene
  102633330

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000112202	Ensembl Gene Model | MGI Sequence Detail	7773	C57BL/6J
transcript	ENSMUST00000217731	Ensembl | MGI Sequence Detail	2335	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 4
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm31181:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr93787	Chr10:66533989-66533996 (+)	25 bp
Tssr93788	Chr10:66534017-66534026 (+)	54 bp
Tssr93789	Chr10:66534035-66534044 (+)	72 bp
Tssr93790	Chr10:66534058-66534077 (+)	100 bp