Gm31172 Gene Detail

Summary

• Symbol
  Gm31172
• Name
  predicted gene, 31172
• Synonyms
  Gm45480

• Feature Type
  lncRNA gene
• IDs
  MGI:5590331
  NCBI Gene: 102633317
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr8:47223471-47226704 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  262 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5590331	lncRNA gene	Chr8:47223471-47227899 (-)
129S1/SvImJ	ENSMUSG00200006574	lncRNA gene	Chr8:42329008-42329440 (-)
A/J	ENSMUSG00195004365	lncRNA gene	Chr8:42828046-42828478 (-)
AKR/J	ENSMUSG00220004668	lncRNA gene	Chr8:42644808-42645240 (-)
BALB/cJ	ENSMUSG00180003068	lncRNA gene	Chr8:42369065-42369497 (-)
C3H/HeJ	ENSMUSG00175005496	lncRNA gene	Chr8:42497403-42497835 (-)
C57BL/6NJ	ENSMUSG00215011449	lncRNA gene	Chr8:42300139-42300571 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005020022	lncRNA gene	Chr8:42339635-42340067 (-)
CBA/J	ENSMUSG00210019081	lncRNA gene	Chr8:42393512-42393944 (-)
DBA/2J	ENSMUSG00185006194	lncRNA gene	Chr8:48239834-48240266 (-)
FVB/NJ	ENSMUSG00205002793	lncRNA gene	Chr8:41523159-41523591 (-)
JF1/MsJ	ENSUMUG00000015606	lncRNA gene	Chr8:49890002-49890434 (-)
LP/J	ENSMUSG00230018404	lncRNA gene	Chr8:51932398-51932830 (-)
NOD/ShiLtJ	ENSMUSG00190006716	lncRNA gene	Chr8:42412942-42413374 (-)
NZO/HlLtJ	ENSMUSG00225011910	lncRNA gene	Chr8:55519290-55519722 (-)
PWK/PhJ	ENSLUMG00010009587	lncRNA gene	Chr8:42162420-42162852 (-)
SPRET/EiJ	ENSMSPG00010006321	lncRNA gene	Chr8:43047524-43047956 (-)
WSB/EiJ	ENSIUOG00005002575	lncRNA gene	Chr8:43252163-43252595 (-)

Homology

• Gene Tree
  Gm31172
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm31172
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  1

• Ensembl
  ENSMUSG00000110374 (Evidence)
• NCBI Gene
  102633317

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000110374	Ensembl Gene Model | MGI Sequence Detail	3234	C57BL/6J
transcript	ENSMUST00000252614	Ensembl | MGI Sequence Detail	816	Not Applicable

Other
Accession IDs

MGI:5791316

References

• Summaries
  All 7

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm31172:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr81215	Chr8:47226652-47226659 (-)	48 bp