Gm31138 Gene Detail

Summary

• Symbol
  Gm31138
• Name
  predicted gene, 31138
• Synonyms
  Gm45831

• Feature Type
  lncRNA gene
• IDs
  MGI:5590297
  NCBI Gene: 102633275
• Alliance
  genome feature page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr9:3199894-3203822 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  148 from dbSNP Build 142
• Strain Annotations
  11

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5590297	lncRNA gene	Chr9:3199268-3267045 (+)
129S1/SvImJ	ENSMUSG00200023201	lncRNA gene	Chr9:36686-52020 (+)
A/J	no annotation
AKR/J	no annotation
BALB/cJ	ENSMUSG00180011629	lncRNA gene	Chr9:99180-114514 (+)
C3H/HeJ	no annotation
C57BL/6NJ	ENSMUSG00215007289	lncRNA gene	Chr9:35043-50377 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005007290	lncRNA gene	Chr9:112348-127735 (+)
CBA/J	no annotation
DBA/2J	ENSMUSG00185005295	lncRNA gene	Chr9:167212-182548 (+)
FVB/NJ	no annotation
JF1/MsJ	ENSUMUG00000008899	lncRNA gene	Chr9:157857-173233 (+)
LP/J	ENSMUSG00230004910	lncRNA gene	Chr9:620634-635970 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	ENSMUSG00225017710	lncRNA gene	Chr9:499361-514697 (+)
PWK/PhJ	ENSLUMG00010006729	lncRNA gene	Chr9:140680-156050 (+)
SPRET/EiJ	ENSMSPG00010005634	lncRNA gene	Chr9:64427-79941 (+)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm31138
  

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  55
• RefSeq
  2

• Ensembl
  ENSMUSG00000110491 (Evidence)
• NCBI Gene
  102633275

Representative Sequences			Length	Strain/Species
genomic	102633275	NCBI Gene Model | MGI Sequence Detail	3929	C57BL/6J
transcript	NR_166723	RefSeq | MGI Sequence Detail	924	ZRU/MplStud

Molecular
Reagents

• All nucleic 1

  cDNA 1

Other
Accession IDs

MGI:5804946

References

• Summaries
  All 6
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm31138:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr83607	Chr9:3199888-3199899 (+)	0 bp
Tssr83608	Chr9:3199908-3199928 (+)	24 bp
Tssr83609	Chr9:3199930-3199939 (+)	41 bp
Tssr83610	Chr9:3199944-3199951 (+)	54 bp