Gm31125 Gene Detail

Summary

• Symbol
  Gm31125
• Name
  predicted gene, 31125

• Feature Type
  lncRNA gene
• IDs
  MGI:5590284
  NCBI Gene: 102633257
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:106696475-106697358 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  68 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5590284	lncRNA gene	Chr4:106696361-106697873 (-)
129S1/SvImJ	ENSMUSG00200050218	lncRNA gene	Chr4:101755015-101755886 (-)
A/J	ENSMUSG00195047613	lncRNA gene	Chr4:102297574-102298445 (-)
AKR/J	ENSMUSG00220006934	lncRNA gene	Chr4:101706297-101707167 (-)
BALB/cJ	ENSMUSG00180034876	lncRNA gene	Chr4:101141678-101142557 (-)
C3H/HeJ	ENSMUSG00175015907	lncRNA gene	Chr4:102146198-102147076 (-)
C57BL/6NJ	ENSMUSG00215032610	lncRNA gene	Chr4:102028393-102029263 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005007661	lncRNA gene	Chr4:101246447-101247318 (-)
CBA/J	ENSMUSG00210053199	lncRNA gene	Chr4:101779216-101780094 (-)
DBA/2J	ENSMUSG00185050098	lncRNA gene	Chr4:102474069-102474940 (-)
FVB/NJ	ENSMUSG00205015714	lncRNA gene	Chr4:100709499-100710371 (-)
JF1/MsJ	ENSUMUG00000048336	lncRNA gene	Chr4:102491555-102492420 (-)
LP/J	ENSMUSG00230009766	lncRNA gene	Chr4:105791484-105792355 (-)
NOD/ShiLtJ	ENSMUSG00190048673	lncRNA gene	Chr4:101149038-101149916 (-)
NZO/HlLtJ	ENSMUSG00225032958	lncRNA gene	Chr4:110892688-110893559 (-)
PWK/PhJ	ENSLUMG00010018664	lncRNA gene	Chr4:100208246-100209111 (-)
SPRET/EiJ	ENSMSPG00010030781	lncRNA gene	Chr4:102452700-102453574 (-)
WSB/EiJ	ENSIUOG00005003305	lncRNA gene	Chr4:101356806-101357677 (-)

Homology

• Gene Tree
  Gm31125
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  9 phenotype references
  

• All Mutations and Alleles
  9
• Chemically induced (other)
  2
• Gene trapped
  5
• Radiation induced
  1
• Targeted
  1
• Genomic Mutations
  4 involving Gm31125
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1

• Ensembl
  ENSMUSG00000120102 (Evidence)
• NCBI Gene
  102633257

Representative Sequences			Length	Strain/Species
genomic	102633257	NCBI Gene Model | MGI Sequence Detail	884	C57BL/6J
transcript	XR_376510	RefSeq | MGI Sequence Detail	590	C57BL/6J

References

• Summaries
  All 12

  Phenotypes 9
• Earliest
  J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8
• Latest
  J:148802 Boles MK, et al., A mouse chromosome 4 balancer ENU-mutagenesis screen isolates eleven lethal lines. BMC Genet. 2009;10:12

TSS for Gm31125:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr42648	Chr4:106697218-106697247 (-)	125 bp