Gm31115 Gene Detail

Summary

• Symbol
  Gm31115
• Name
  predicted gene, 31115

• Feature Type
  lncRNA gene
• IDs
  MGI:5590274
  NCBI Gene: 102633240
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:64072506-64204355 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  4260 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5590274	lncRNA gene	Chr4:64072487-64204558 (+)
129S1/SvImJ	ENSMUSG00200004771	lncRNA gene	Chr4:59051683-59183680 (+)
A/J	ENSMUSG00195008758	lncRNA gene	Chr4:59633965-59765966 (+)
AKR/J	ENSMUSG00220006305	lncRNA gene	Chr4:59443009-59574975 (+)
BALB/cJ	ENSMUSG00180031950	lncRNA gene	Chr4:58619803-58751808 (+)
C3H/HeJ	ENSMUSG00175022810	lncRNA gene	Chr4:59402513-59534519 (+)
C57BL/6NJ	ENSMUSG00215031756	lncRNA gene	Chr4:59473773-59605734 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005008456	lncRNA gene	Chr4:59216563-59342210 (+)
CBA/J	ENSMUSG00210006192	lncRNA gene	Chr4:59153731-59285664 (+)
DBA/2J	ENSMUSG00185019364	lncRNA gene	Chr4:59584488-59718031 (+)
FVB/NJ	ENSMUSG00205018366	lncRNA gene	Chr4:57838597-57970527 (+)
JF1/MsJ	ENSUMUG00000027139	lncRNA gene	Chr4:60231742-60362384 (+)
LP/J	ENSMUSG00230011350	lncRNA gene	Chr4:63061486-63193485 (+)
NOD/ShiLtJ	ENSMUSG00190038212	lncRNA gene	Chr4:58552305-58684247 (+)
NZO/HlLtJ	ENSMUSG00225013738	lncRNA gene	Chr4:68088903-68220908 (+)
PWK/PhJ	ENSLUMG00010007781	lncRNA gene	Chr4:57877791-58015616 (+)
SPRET/EiJ	ENSMSPG00010036200	lncRNA gene	Chr4:59109327-59246693 (+)
WSB/EiJ	ENSIUOG00005022412	lncRNA gene	Chr4:58923793-59064480 (+)

Homology

• Gene Tree
  Gm31115
  

Sequences &
Gene Models

• All Sequences
  36
• RefSeq
  3

• Ensembl
  ENSMUSG00000120418 (Evidence)
• NCBI Gene
  102633240

Representative Sequences			Length	Strain/Species
genomic	102633240	NCBI Gene Model | MGI Sequence Detail	131850	C57BL/6J
transcript	XR_390646	RefSeq | MGI Sequence Detail	1317	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm31115:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr37596	Chr4:64072598-64072642 (+)	114 bp