Gm31072 Gene Detail

Summary

• Symbol
  Gm31072
• Name
  predicted gene, 31072

• Feature Type
  lncRNA gene
• IDs
  MGI:5590231
  NCBI Gene: 102633181
• Alliance
  genome feature page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr14:115183451-115185728 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  212 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5590231	lncRNA gene	Chr14:115183388-115185736 (+)
129S1/SvImJ	ENSMUSG00200024798	lncRNA gene	Chr14:104080361-104081946 (+)
A/J	ENSMUSG00195031263	lncRNA gene	Chr14:103834989-103836574 (+)
AKR/J	ENSMUSG00220007842	lncRNA gene	Chr14:103612951-103614536 (+)
BALB/cJ	ENSMUSG00180029234	lncRNA gene	Chr14:103327185-103328770 (+)
C3H/HeJ	ENSMUSG00175006029	lncRNA gene	Chr14:105262963-105264548 (+)
C57BL/6NJ	ENSMUSG00215029253	lncRNA gene	Chr14:103448671-103450256 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005007192	lncRNA gene	Chr14:104947450-104949041 (+)
CBA/J	ENSMUSG00210027154	lncRNA gene	Chr14:104231642-104233227 (+)
DBA/2J	ENSMUSG00185021579	lncRNA gene	Chr14:109387972-109389557 (+)
FVB/NJ	ENSMUSG00205007866	lncRNA gene	Chr14:102937146-102943806 (+)
JF1/MsJ	ENSUMUG00000012465	lncRNA gene	Chr14:120440037-120441622 (+)
LP/J	ENSMUSG00230001931	lncRNA gene	Chr14:121381752-121383337 (+)
NOD/ShiLtJ	ENSMUSG00190026007	lncRNA gene	Chr14:104022024-104023609 (+)
NZO/HlLtJ	ENSMUSG00225021659	lncRNA gene	Chr14:111384473-111386058 (+)
PWK/PhJ	ENSLUMG00010029619	lncRNA gene	Chr14:103291825-103293409 (+)
SPRET/EiJ	ENSMSPG00010012415	lncRNA gene	Chr14:107462456-107464048 (+)
WSB/EiJ	ENSIUOG00005031148	lncRNA gene	Chr14:103212531-103214109 (+)

Homology

• Gene Tree
  Gm31072
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Gene trapped
  1
• Genomic Mutations
  1 involving Gm31072
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  3

• Ensembl
  ENSMUSG00000114979 (Evidence)
• NCBI Gene
  102633181

Representative Sequences			Length	Strain/Species
genomic	102633181	NCBI Gene Model | MGI Sequence Detail	2278	C57BL/6J
transcript	NR_168698	RefSeq | MGI Sequence Detail	1006	ZRU/MplStud

References

• Summaries
  All 6

  Phenotypes 3
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm31072:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr127120	Chr14:115183425-115183436 (+)	-20 bp
Tssr127121	Chr14:115183444-115183462 (+)	2 bp
Tssr127122	Chr14:115183469-115183474 (+)	21 bp
Tssr127123	Chr14:115183478-115183490 (+)	33 bp
Tssr4519	Chr14:115183491-115183495 (+)	42 bp