Gm31013 Gene Detail

Summary

• Symbol
  Gm31013
• Name
  predicted gene, 31013

• Feature Type
  lncRNA gene
• IDs
  MGI:5590172
  NCBI Gene: 102633104
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr9:30633385-30693251 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  2313 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5590172	lncRNA gene	Chr9:30632612-30693324 (-)
129S1/SvImJ	ENSMUSG00200008165	lncRNA gene	Chr9:27625684-27685844 (-)
A/J	ENSMUSG00195006408	lncRNA gene	Chr9:27437624-27497795 (-)
AKR/J	ENSMUSG00220010782	lncRNA gene	Chr9:27472879-27533049 (-)
BALB/cJ	ENSMUSG00180006944	lncRNA gene	Chr9:27566075-27626250 (-)
C3H/HeJ	ENSMUSG00175020308	lncRNA gene	Chr9:27546646-27606813 (-)
C57BL/6NJ	ENSMUSG00215008418	lncRNA gene	Chr9:27528028-27588195 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005018992	lncRNA gene	Chr9:27525034-27586331 (-)
CBA/J	ENSMUSG00210022127	lncRNA gene	Chr9:27578427-27638706 (-)
DBA/2J	ENSMUSG00185002868	lncRNA gene	Chr9:27624463-27684629 (-)
FVB/NJ	ENSMUSG00205004570	lncRNA gene	Chr9:27926792-27986954 (-)
JF1/MsJ	ENSUMUG00000015865	lncRNA gene	Chr9:27791766-27854913 (-)
LP/J	ENSMUSG00230005511	lncRNA gene	Chr9:28057064-28120212 (-)
NOD/ShiLtJ	ENSMUSG00190006490	lncRNA gene	Chr9:27663977-27724132 (-)
NZO/HlLtJ	ENSMUSG00225015117	lncRNA gene	Chr9:28038170-28098453 (-)
PWK/PhJ	ENSLUMG00010009570	lncRNA gene	Chr9:27654931-27717136 (-)
SPRET/EiJ	ENSMSPG00010002124	lncRNA gene	Chr9:28018906-28081151 (-)
WSB/EiJ	ENSIUOG00005016252	lncRNA gene	Chr9:27104730-27165335 (-)

Homology

• Gene Tree
  Gm31013
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  48
• RefSeq
  4

• Ensembl
  ENSMUSG00000111867 (Evidence)
• NCBI Gene
  102633104

Representative Sequences			Length	Strain/Species
genomic	102633104	NCBI Gene Model | MGI Sequence Detail	59867	C57BL/6J
transcript	XR_379209	RefSeq | MGI Sequence Detail	629	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm31013:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr88607	Chr9:30692703-30692723 (-)	538 bp
Tssr88606	Chr9:30692684-30692692 (-)	563 bp
Tssr88605	Chr9:30692661-30692667 (-)	587 bp