Gm30969 Gene Detail

Summary

• Symbol
  Gm30969
• Name
  predicted gene, 30969

• Feature Type
  lncRNA gene
• IDs
  MGI:5590128
  NCBI Gene: 102633051
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr14:34496477-34500239 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  330 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5590128	lncRNA gene	Chr14:34496438-34500239 (+)
129S1/SvImJ	ENSMUSG00200038543	lncRNA gene	Chr14:26336589-26340338 (+)
A/J	ENSMUSG00195014553	lncRNA gene	Chr14:27397803-27401529 (+)
AKR/J	ENSMUSG00220036872	lncRNA gene	Chr14:26517774-26521500 (+)
BALB/cJ	ENSMUSG00180029937	lncRNA gene	Chr14:26486288-26490014 (+)
C3H/HeJ	ENSMUSG00175044311	lncRNA gene	Chr14:26553365-26557091 (+)
C57BL/6NJ	ENSMUSG00215036834	lncRNA gene	Chr14:26797105-26800831 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005025822	lncRNA gene	Chr14:26617180-26620919 (+)
CBA/J	ENSMUSG00210044774	lncRNA gene	Chr14:26804212-26807938 (+)
DBA/2J	ENSMUSG00185015503	lncRNA gene	Chr14:31064617-31068396 (+)
FVB/NJ	ENSMUSG00205038547	lncRNA gene	Chr14:26653773-26657499 (+)
JF1/MsJ	ENSUMUG00000052345	lncRNA gene	Chr14:38326941-38330690 (+)
LP/J	ENSMUSG00230038259	lncRNA gene	Chr14:38363894-38367643 (+)
NOD/ShiLtJ	ENSMUSG00190020060	lncRNA gene	Chr14:26805272-26808998 (+)
NZO/HlLtJ	ENSMUSG00225042008	lncRNA gene	Chr14:32684834-32688560 (+)
PWK/PhJ	ENSLUMG00010023737	lncRNA gene	Chr14:14912668-14916383 (+)
SPRET/EiJ	ENSMSPG00010044549	lncRNA gene	Chr14:28480813-28484594 (+)
WSB/EiJ	ENSIUOG00005012876	lncRNA gene	Chr14:26621712-26625438 (+)

Homology

• Gene Tree
  Gm30969
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Gene trapped
  2
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  2

• Ensembl
  ENSMUSG00000120637 (Evidence)
• NCBI Gene
  102633051

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120637	Ensembl Gene Model | MGI Sequence Detail	3763	C57BL/6J
transcript	ENSMUST00000346658	Ensembl | MGI Sequence Detail	1455	Not Applicable

References

• Summaries
  All 6

  Phenotypes 3
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm30969:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr125098	Chr14:34496508-34496541 (+)	48 bp