Gm30963 Gene Detail

Summary

• Symbol
  Gm30963
• Name
  predicted gene, 30963

• Feature Type
  lncRNA gene
• IDs
  MGI:5590122
  NCBI Gene: 102633042
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:89572633-89577055 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  279 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5590122	lncRNA gene	Chr10:89572555-89577142 (-)
129S1/SvImJ	ENSMUSG00200032123	lncRNA gene	Chr10:86070602-86075062 (-)
A/J	ENSMUSG00195022730	lncRNA gene	Chr10:86520886-86525349 (-)
AKR/J	ENSMUSG00220022924	lncRNA gene	Chr10:86079515-86083978 (-)
BALB/cJ	ENSMUSG00180035844	lncRNA gene	Chr10:86523820-86528275 (-)
C3H/HeJ	ENSMUSG00175023970	lncRNA gene	Chr10:86403927-86408389 (-)
C57BL/6NJ	ENSMUSG00215033816	lncRNA gene	Chr10:86073361-86077821 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005038216	lncRNA gene	Chr10:85798308-85802776 (-)
CBA/J	ENSMUSG00210039011	lncRNA gene	Chr10:86244390-86248852 (-)
DBA/2J	ENSMUSG00185044371	lncRNA gene	Chr10:86462735-86467205 (-)
FVB/NJ	ENSMUSG00205023411	lncRNA gene	Chr10:86125830-86130289 (-)
JF1/MsJ	ENSUMUG00000030754	lncRNA gene	Chr10:87822232-87826715 (-)
LP/J	ENSMUSG00230019277	lncRNA gene	Chr10:88350729-88355191 (-)
NOD/ShiLtJ	ENSMUSG00190019582	lncRNA gene	Chr10:86505914-86510377 (-)
NZO/HlLtJ	ENSMUSG00225022380	lncRNA gene	Chr10:92629305-92633764 (-)
PWK/PhJ	ENSLUMG00010024953	lncRNA gene	Chr10:86128526-86132994 (-)
SPRET/EiJ	ENSMSPG00010036678	lncRNA gene	Chr10:87648820-87655162 (-)
WSB/EiJ	ENSIUOG00005039674	lncRNA gene	Chr10:86212861-86217322 (-)

Homology

• Gene Tree
  Gm30963
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Transposon induced
  1
• Genomic Mutations
  2 involving Gm30963
• Find Mice (IMSR)
  0 strains or lines available

Expression

• cDNA Data
  1

• Other Mouse Links
  GEO

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  1

• Ensembl
  ENSMUSG00000120327 (Evidence)
• NCBI Gene
  102633042

Representative Sequences			Length	Strain/Species
genomic	102633042	NCBI Gene Model | MGI Sequence Detail	4423	C57BL/6J
transcript	NR_155765	RefSeq | MGI Sequence Detail	620	ZRU/MplStud

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 10

  Phenotypes 6
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87

TSS for Gm30963:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr98892	Chr10:89577076-89577098 (-)	-32 bp