Gm30961 Gene Detail

Summary

• Symbol
  Gm30961
• Name
  predicted gene, 30961

• Feature Type
  lncRNA gene
• IDs
  MGI:5590120
  NCBI Gene: 102633040
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr18:39769361-39789270 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  515 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5590120	lncRNA gene	Chr18:39672307-39795468 (+)
129S1/SvImJ	ENSMUSG00200045279	lncRNA gene	Chr18:36677012-36786190 (+)
A/J	ENSMUSG00195037854	lncRNA gene	Chr18:36829560-36938724 (+)
AKR/J	ENSMUSG00220017838	lncRNA gene	Chr18:36797563-36906737 (+)
BALB/cJ	ENSMUSG00180021181	lncRNA gene	Chr18:37279164-37388324 (+)
C3H/HeJ	ENSMUSG00175040988	lncRNA gene	Chr18:36796481-36905660 (+)
C57BL/6NJ	ENSMUSG00215034381	lncRNA gene	Chr18:36543713-36652907 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005025492	lncRNA gene	Chr18:36424242-36527589 (+)
CBA/J	ENSMUSG00210021958	lncRNA gene	Chr18:36821088-36930245 (+)
DBA/2J	ENSMUSG00185021365	lncRNA gene	Chr18:36755662-36864817 (+)
FVB/NJ	ENSMUSG00205036806	lncRNA gene	Chr18:36460752-36563003 (+)
JF1/MsJ	ENSUMUG00000048873	lncRNA gene	Chr18:36890673-36993517 (+)
LP/J	ENSMUSG00230049254	lncRNA gene	Chr18:38871920-38981084 (+)
NOD/ShiLtJ	ENSMUSG00190023759	lncRNA gene	Chr18:36546342-36654549 (+)
NZO/HlLtJ	ENSMUSG00225047282	lncRNA gene	Chr18:38774665-38883830 (+)
PWK/PhJ	ENSLUMG00010013193	lncRNA gene	Chr18:37039913-37143011 (+)
SPRET/EiJ	ENSMSPG00010023254	lncRNA gene	Chr18:37082547-37185529 (+)
WSB/EiJ	ENSIUOG00005008243	lncRNA gene	Chr18:36539199-36648434 (+)

Homology

• Gene Tree
  Gm30961
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  49
• RefSeq
  2

• Ensembl
  ENSMUSG00000118117 (Evidence)
• NCBI Gene
  102633040

Representative Sequences			Length	Strain/Species
genomic	102633040	NCBI Gene Model | MGI Sequence Detail	19910	C57BL/6J
transcript	XR_877345	RefSeq | MGI Sequence Detail	963	C57BL/6J

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14