Gm30934 Gene Detail

Summary

• Symbol
  Gm30934
• Name
  predicted gene, 30934

• Feature Type
  lncRNA gene
• IDs
  MGI:5590093
  NCBI Gene: 102633002
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr9:44832324-44835543 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  142 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5590093	lncRNA gene	Chr9:44831352-44840597 (+)
129S1/SvImJ	ENSMUSG00200018578	lncRNA gene	Chr9:41908130-41909766 (+)
A/J	ENSMUSG00195023939	lncRNA gene	Chr9:41666747-41668387 (+)
AKR/J	ENSMUSG00220042219	lncRNA gene	Chr9:41749277-41750917 (+)
BALB/cJ	ENSMUSG00180031326	lncRNA gene	Chr9:41778462-41780102 (+)
C3H/HeJ	ENSMUSG00175015612	lncRNA gene	Chr9:41790359-41791999 (+)
C57BL/6NJ	ENSMUSG00215039339	lncRNA gene	Chr9:41751822-41753462 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005016088	lncRNA gene	Chr9:41737687-41739334 (+)
CBA/J	ENSMUSG00210017059	lncRNA gene	Chr9:41833035-41834675 (+)
DBA/2J	ENSMUSG00185012350	lncRNA gene	Chr9:41905034-41906674 (+)
FVB/NJ	ENSMUSG00205040197	lncRNA gene	Chr9:42148685-42150325 (+)
JF1/MsJ	ENSUMUG00000043601	lncRNA gene	Chr9:41947880-41949516 (+)
LP/J	ENSMUSG00230042693	lncRNA gene	Chr9:42198567-42200203 (+)
NOD/ShiLtJ	ENSMUSG00190024798	lncRNA gene	Chr9:41983996-41985636 (+)
NZO/HlLtJ	ENSMUSG00225044687	lncRNA gene	Chr9:42162271-42163911 (+)
PWK/PhJ	ENSLUMG00010021531	lncRNA gene	Chr9:41907243-41908880 (+)
SPRET/EiJ	ENSMSPG00010011353	lncRNA gene	Chr9:42668697-42670331 (+)
WSB/EiJ	ENSIUOG00005022198	lncRNA gene	Chr9:41393687-41395327 (+)

Homology

• Gene Tree
  Gm30934
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Gene trapped
  2
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  31
• RefSeq
  1

• Ensembl
  ENSMUSG00000111082 (Evidence)
• NCBI Gene
  102633002

Representative Sequences			Length	Strain/Species
genomic	102633002	NCBI Gene Model | MGI Sequence Detail	3220	C57BL/6J
transcript	XR_379340	RefSeq | MGI Sequence Detail	3110	C57BL/6J

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm30934:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr84703	Chr9:44831488-44831516 (+)	-822 bp