Gm30925 Gene Detail

Summary

• Symbol
  Gm30925
• Name
  predicted gene, 30925

• Feature Type
  lncRNA gene
• IDs
  MGI:5590084
  NCBI Gene: 102632989
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr8:116556963-116568708 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  421 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5590084	lncRNA gene	Chr8:116550701-116568945 (+)
129S1/SvImJ	ENSMUSG00200043613	lncRNA gene	Chr8:110894045-110905494 (+)
A/J	ENSMUSG00195027496	lncRNA gene	Chr8:111178707-111190152 (+)
AKR/J	ENSMUSG00220043239	lncRNA gene	Chr8:111369203-111380648 (+)
BALB/cJ	ENSMUSG00180028658	lncRNA gene	Chr8:111224375-111235817 (+)
C3H/HeJ	ENSMUSG00175033776	lncRNA gene	Chr8:111273223-111284723 (+)
C57BL/6NJ	ENSMUSG00215032366	lncRNA gene	Chr8:110855098-110866547 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005035368	lncRNA gene	Chr8:110573019-110584497 (+)
CBA/J	ENSMUSG00210036887	lncRNA gene	Chr8:111175061-111193658 (+)
DBA/2J	ENSMUSG00185018279	lncRNA gene	Chr8:117274062-117292670 (+)
FVB/NJ	ENSMUSG00205024041	lncRNA gene	Chr8:110182112-110193614 (+)
JF1/MsJ	ENSUMUG00000020117	lncRNA gene	Chr8:119598693-119610142 (+)
LP/J	ENSMUSG00230031412	lncRNA gene	Chr8:120947756-120959203 (+)
NOD/ShiLtJ	ENSMUSG00190020836	lncRNA gene	Chr8:111325025-111336472 (+)
NZO/HlLtJ	ENSMUSG00225043396	lncRNA gene	Chr8:124294028-124305463 (+)
PWK/PhJ	ENSLUMG00010029628	lncRNA gene	Chr8:111050374-111061791 (+)
SPRET/EiJ	ENSMSPG00010039651	lncRNA gene	Chr8:113211754-113222986 (+)
WSB/EiJ	ENSIUOG00005030541	lncRNA gene	Chr8:112037079-112048569 (+)

Homology

• Gene Tree
  Gm30925
  

Sequences &
Gene Models

• All Sequences
  44
• RefSeq
  4

• Ensembl
  ENSMUSG00000120146 (Evidence)
• NCBI Gene
  102632989

Representative Sequences			Length	Strain/Species
genomic	102632989	NCBI Gene Model | MGI Sequence Detail	11746	C57BL/6J
transcript	XR_388067	RefSeq | MGI Sequence Detail	821	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm30925:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr79562	Chr8:116557252-116557263 (+)	295 bp
Tssr79563	Chr8:116557268-116557279 (+)	311 bp