Lncbate6 Gene Detail

Summary

• Symbol
  Lncbate6
• Name
  brown adipose tissue enriched long noncoding RNA 6
• Synonyms
  Gm30918

• Feature Type
  lncRNA gene
• IDs
  MGI:5590077
  NCBI Gene: 102632980
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr13:37724112-37733439 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  442 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5590077	lncRNA gene	Chr13:37724112-37773289 (+)
129S1/SvImJ	ENSMUSG00200012751	lncRNA gene	Chr13:34949101-34958920 (+)
A/J	ENSMUSG00195035451	lncRNA gene	Chr13:34026065-34035882 (+)
AKR/J	ENSMUSG00220034705	lncRNA gene	Chr13:33797044-33805473 (+)
BALB/cJ	ENSMUSG00180008588	lncRNA gene	Chr13:34331661-34341479 (+)
C3H/HeJ	ENSMUSG00175013306	lncRNA gene	Chr13:34284336-34294150 (+)
C57BL/6NJ	ENSMUSG00215017334	lncRNA gene	Chr13:34455100-34463468 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005037505	lncRNA gene	Chr13:34383915-34393879 (+)
CBA/J	ENSMUSG00210011941	lncRNA gene	Chr13:34292065-34301884 (+)
DBA/2J	ENSMUSG00185035387	lncRNA gene	Chr13:35120324-35128692 (+)
FVB/NJ	ENSMUSG00205038863	lncRNA gene	Chr13:33987622-33997442 (+)
JF1/MsJ	ENSUMUG00000034519	lncRNA gene	Chr13:34679029-34688978 (+)
LP/J	ENSMUSG00230016737	lncRNA gene	Chr13:44435003-44444823 (+)
NOD/ShiLtJ	ENSMUSG00190012988	lncRNA gene	Chr13:34516389-34524753 (+)
NZO/HlLtJ	ENSMUSG00225035221	lncRNA gene	Chr13:38229741-38238170 (+)
PWK/PhJ	ENSLUMG00010031077	lncRNA gene	Chr13:33509125-33519030 (+)
SPRET/EiJ	ENSMSPG00010011093	lncRNA gene	Chr13:33522377-33532571 (+)
WSB/EiJ	ENSIUOG00005029150	lncRNA gene	Chr13:33653013-33662855 (+)

Homology

• Gene Tree
  Lncbate6
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Lncbate6
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  1

• Ensembl
  ENSMUSG00000114665 (Evidence)
• NCBI Gene
  102632980

Representative Sequences			Length	Strain/Species
genomic	102632980	NCBI Gene Model | MGI Sequence Detail	9328	C57BL/6J
transcript	AK155516	GenBank | ENA | DDBJ | MGI Sequence Detail	910	NOD

Molecular
Reagents

• All nucleic 1

  cDNA 1

Other
Accession IDs

MGI:6284318

References

• Summaries
  All 10

  Phenotypes 3
• Earliest
  J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
• Latest
  J:262213 Lo KA, et al., Adipocyte Long-Noncoding RNA Transcriptome Analysis of Obese Mice Identified Lnc-Leptin, Which Regulates Leptin. Diabetes. 2018 Jun;67(6):1045-1056

TSS for Lncbate6:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr119295	Chr13:37727033-37727049 (+)	2,929 bp
Tssr119296	Chr13:37727052-37727079 (+)	2,954 bp