Gm30889 Gene Detail

Summary

• Symbol
  Gm30889
• Name
  predicted gene, 30889

• Feature Type
  lncRNA gene
• IDs
  MGI:5590048
  NCBI Gene: 102632943
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr18:82920172-82923801 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  176 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5590048	lncRNA gene	Chr18:82920130-82923804 (+)
129S1/SvImJ	ENSMUSG00200030476	lncRNA gene	Chr18:80131329-80134913 (+)
A/J	ENSMUSG00195005041	lncRNA gene	Chr18:80229069-80232665 (+)
AKR/J	ENSMUSG00220017528	lncRNA gene	Chr18:80148632-80152230 (+)
BALB/cJ	ENSMUSG00180013980	lncRNA gene	Chr18:80795805-80799401 (+)
C3H/HeJ	ENSMUSG00175013145	lncRNA gene	Chr18:80335959-80339559 (+)
C57BL/6NJ	ENSMUSG00215028611	lncRNA gene	Chr18:79714947-79718543 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005029803	lncRNA gene	Chr18:79246502-79250143 (+)
CBA/J	ENSMUSG00210035750	lncRNA gene	Chr18:80286455-80290053 (+)
DBA/2J	ENSMUSG00185011950	lncRNA gene	Chr18:80191744-80195342 (+)
FVB/NJ	ENSMUSG00205016979	lncRNA gene	Chr18:79599880-79603478 (+)
JF1/MsJ	ENSUMUG00000036111	lncRNA gene	Chr18:80080662-80084324 (+)
LP/J	ENSMUSG00230018009	lncRNA gene	Chr18:82233484-82237068 (+)
NOD/ShiLtJ	ENSMUSG00190024898	lncRNA gene	Chr18:80016814-80020412 (+)
NZO/HlLtJ	ENSMUSG00225023568	lncRNA gene	Chr18:82116548-82120139 (+)
PWK/PhJ	ENSLUMG00010007248	lncRNA gene	Chr18:80477098-80480759 (+)
SPRET/EiJ	ENSMSPG00010009806	lncRNA gene	Chr18:80839403-80843037 (+)
WSB/EiJ	ENSIUOG00005008196	lncRNA gene	Chr18:79649145-79652732 (+)

Homology

• Gene Tree
  Gm30889
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  4
• Gene trapped
  3
• Transposon induced
  1
• Genomic Mutations
  1 involving Gm30889
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1

• Ensembl
  ENSMUSG00000117762 (Evidence)
• NCBI Gene
  102632943

Representative Sequences			Length	Strain/Species
genomic	102632943	NCBI Gene Model | MGI Sequence Detail	3630	C57BL/6J
transcript	NR_166715	RefSeq | MGI Sequence Detail	1076	ZRU/MplStud

References

• Summaries
  All 7

  Phenotypes 4
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm30889:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr152187	Chr18:82920167-82920176 (+)	0 bp
Tssr152188	Chr18:82920213-82920225 (+)	47 bp