Gm30842 Gene Detail

Summary

• Symbol
  Gm30842
• Name
  predicted gene, 30842

• Feature Type
  lncRNA gene
• IDs
  MGI:5590001
  NCBI Gene: 102632880
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:121114447-121131956 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  631 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5590001	lncRNA gene	Chr6:121114373-121139927 (+)
129S1/SvImJ	ENSMUSG00200051336	lncRNA gene	Chr6:118313441-118331268 (+)
A/J	ENSMUSG00195049249	lncRNA gene	Chr6:117727621-117745449 (+)
AKR/J	ENSMUSG00220032845	lncRNA gene	Chr6:116612832-116630653 (+)
BALB/cJ	ENSMUSG00180050660	lncRNA gene	Chr6:118095274-118113102 (+)
C3H/HeJ	ENSMUSG00175049846	lncRNA gene	Chr6:117750607-117768432 (+)
C57BL/6NJ	ENSMUSG00215048495	lncRNA gene	Chr6:118081786-118099612 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005051404	lncRNA gene	Chr6:117884812-117902904 (+)
CBA/J	ENSMUSG00210045043	lncRNA gene	Chr6:117862232-117880057 (+)
DBA/2J	ENSMUSG00185049725	lncRNA gene	Chr6:118520013-118537840 (+)
FVB/NJ	ENSMUSG00205051120	lncRNA gene	Chr6:116961890-116979717 (+)
JF1/MsJ	ENSUMUG00000053057	lncRNA gene	Chr6:117114699-117132473 (+)
LP/J	ENSMUSG00230048699	lncRNA gene	Chr6:119710807-119728632 (+)
NOD/ShiLtJ	ENSMUSG00190052054	lncRNA gene	Chr6:117475116-117492933 (+)
NZO/HlLtJ	ENSMUSG00225047574	lncRNA gene	Chr6:121605536-121623361 (+)
PWK/PhJ	ENSLUMG00010049204	lncRNA gene	Chr6:116455284-116473028 (+)
SPRET/EiJ	ENSMSPG00010045811	lncRNA gene	Chr6:119329198-119347113 (+)
WSB/EiJ	ENSIUOG00005045126	lncRNA gene	Chr6:118118501-118136304 (+)

Homology

• Gene Tree
  Gm30842
  

Sequences &
Gene Models

• All Sequences
  65
• RefSeq
  2

• Ensembl
  ENSMUSG00000119973 (Evidence)
• NCBI Gene
  102632880

Representative Sequences			Length	Strain/Species
genomic	102632880	NCBI Gene Model | MGI Sequence Detail	17510	C57BL/6J
transcript	NR_167972	RefSeq | MGI Sequence Detail	967	ZRU/MplStud

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm30842:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr58562	Chr6:121114441-121114456 (+)	2 bp