Gm30788 Gene Detail

Summary

• Symbol
  Gm30788
• Name
  predicted gene, 30788

• Feature Type
  lncRNA gene
• IDs
  MGI:5589947
  NCBI Gene: 102632811
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:72784245-72809141 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  896 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5589947	lncRNA gene	Chr1:72773499-72812044 (-)
129S1/SvImJ	ENSMUSG00200005147	lncRNA gene	Chr1:70446686-70471203 (-)
A/J	ENSMUSG00195032060	lncRNA gene	Chr1:69860134-69884662 (-)
AKR/J	ENSMUSG00220040247	lncRNA gene	Chr1:70012334-70036823 (-)
BALB/cJ	ENSMUSG00180031935	lncRNA gene	Chr1:70125207-70149726 (-)
C3H/HeJ	ENSMUSG00175000871	lncRNA gene	Chr1:70255457-70279980 (-)
C57BL/6NJ	ENSMUSG00215023063	lncRNA gene	Chr1:70170999-70195515 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005022054	lncRNA gene	Chr1:69919342-69943853 (-)
CBA/J	ENSMUSG00210003279	lncRNA gene	Chr1:69953188-69977699 (-)
DBA/2J	ENSMUSG00185005374	lncRNA gene	Chr1:71043170-71067644 (-)
FVB/NJ	ENSMUSG00205015856	lncRNA gene	Chr1:69679832-69704352 (-)
JF1/MsJ	ENSUMUG00000004451	lncRNA gene	Chr1:69956989-69981487 (-)
LP/J	ENSMUSG00230002986	lncRNA gene	Chr1:71037918-71062430 (-)
NOD/ShiLtJ	ENSMUSG00190014198	lncRNA gene	Chr1:70170085-70194559 (-)
NZO/HlLtJ	ENSMUSG00225040712	lncRNA gene	Chr1:74253036-74277558 (-)
PWK/PhJ	ENSLUMG00010007671	lncRNA gene	Chr1:69554556-69578974 (-)
SPRET/EiJ	ENSMSPG00010019755	lncRNA gene	Chr1:71627086-71651540 (-)
WSB/EiJ	ENSIUOG00005029487	lncRNA gene	Chr1:69822882-69847319 (-)

Homology

• Gene Tree
  Gm30788
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  6
• Chemically induced (other)
  1
• Gene trapped
  4
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm30788
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  58
• RefSeq
  7

• Ensembl
  ENSMUSG00000120056 (Evidence)
• NCBI Gene
  102632811

Representative Sequences			Length	Strain/Species
genomic	102632811	NCBI Gene Model | MGI Sequence Detail	24897	C57BL/6J
transcript	XR_865531	RefSeq | MGI Sequence Detail	3280	C57BL/6J

References

• Summaries
  All 9

  Phenotypes 6
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Gm30788:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr12175	Chr1:72808770-72808786 (-)	363 bp