Gm30779 Gene Detail

Summary

• Symbol
  Gm30779
• Name
  predicted gene, 30779

• Feature Type
  lncRNA gene
• IDs
  MGI:5589938
  NCBI Gene: 102632801
• Alliance
  genome feature page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr6:26739748-26766942 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  905 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5589938	lncRNA gene	Chr6:26721874-26766942 (-)
129S1/SvImJ	ENSMUSG00200035597	lncRNA gene	Chr6:23795701-23822875 (-)
A/J	ENSMUSG00195008804	lncRNA gene	Chr6:23754493-23781666 (-)
AKR/J	ENSMUSG00220003710	lncRNA gene	Chr6:23326935-23354111 (-)
BALB/cJ	ENSMUSG00180024240	lncRNA gene	Chr6:23886300-23913464 (-)
C3H/HeJ	ENSMUSG00175020348	lncRNA gene	Chr6:23751993-23779170 (-)
C57BL/6NJ	ENSMUSG00215029268	lncRNA gene	Chr6:23778152-23805313 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005028845	lncRNA gene	Chr6:23358201-23381966 (-)
CBA/J	ENSMUSG00210004372	lncRNA gene	Chr6:23773373-23800546 (-)
DBA/2J	ENSMUSG00185022337	lncRNA gene	Chr6:23868320-23895483 (-)
FVB/NJ	ENSMUSG00205036232	lncRNA gene	Chr6:23799999-23827171 (-)
JF1/MsJ	ENSUMUG00000042935	lncRNA gene	Chr6:23539715-23569187 (-)
LP/J	ENSMUSG00230030630	lncRNA gene	Chr6:24811536-24838707 (-)
NOD/ShiLtJ	ENSMUSG00190028035	lncRNA gene	Chr6:23615452-23642609 (-)
NZO/HlLtJ	ENSMUSG00225014678	lncRNA gene	Chr6:26769959-26797120 (-)
PWK/PhJ	ENSLUMG00010026296	lncRNA gene	Chr6:23321942-23346426 (-)
SPRET/EiJ	ENSMSPG00010023939	lncRNA gene	Chr6:23751561-23776096 (-)
WSB/EiJ	ENSIUOG00005036457	lncRNA gene	Chr6:23855404-23879872 (-)

Homology

• Gene Tree
  Gm30779
  

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1

• Ensembl
  ENSMUSG00000120453 (Evidence)
• NCBI Gene
  102632801

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120453	Ensembl Gene Model | MGI Sequence Detail	27195	C57BL/6J
transcript	ENSMUST00000357416	Ensembl | MGI Sequence Detail	875	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm30779:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr60017	Chr6:26766901-26766907 (-)	38 bp
Tssr60016	Chr6:26766884-26766895 (-)	52 bp
Tssr60015	Chr6:26766860-26766874 (-)	75 bp
Tssr60014	Chr6:26766817-26766823 (-)	122 bp