Gm30693 Gene Detail

Summary

• Symbol
  Gm30693
• Name
  predicted gene, 30693

• Feature Type
  lncRNA gene
• IDs
  MGI:5589852
  NCBI Gene: 102632687
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr16:22915356-22921881 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  355 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5589852	lncRNA gene	Chr16:22915344-22921976 (-)
129S1/SvImJ	ENSMUSG00200046900	lncRNA gene	Chr16:19920029-19920606 (-)
A/J	ENSMUSG00195036909	lncRNA gene	Chr16:19474517-19475094 (-)
AKR/J	ENSMUSG00220045701	lncRNA gene	Chr16:19793946-19794523 (-)
BALB/cJ	ENSMUSG00180042201	lncRNA gene	Chr16:19715125-19715702 (-)
C3H/HeJ	ENSMUSG00175050637	lncRNA gene	Chr16:19860044-19860621 (-)
C57BL/6NJ	ENSMUSG00215041808	lncRNA gene	Chr16:19587245-19587822 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005035863	lncRNA gene	Chr16:20190617-20191194 (-)
CBA/J	ENSMUSG00210047801	lncRNA gene	Chr16:19881732-19882309 (-)
DBA/2J	ENSMUSG00185035881	lncRNA gene	Chr16:19820521-19821098 (-)
FVB/NJ	ENSMUSG00205048971	lncRNA gene	Chr16:19821180-19821757 (-)
JF1/MsJ	ENSUMUG00000054010	lncRNA gene	Chr16:20041784-20042363 (-)
LP/J	ENSMUSG00230033933	lncRNA gene	Chr16:22399543-22400120 (-)
NOD/ShiLtJ	ENSMUSG00190050140	lncRNA gene	Chr16:19961934-19962511 (-)
NZO/HlLtJ	ENSMUSG00225039154	lncRNA gene	Chr16:25650679-25651256 (-)
PWK/PhJ	ENSLUMG00010050263	lncRNA gene	Chr16:19865217-19865794 (-)
SPRET/EiJ	ENSMSPG00010047003	lncRNA gene	Chr16:19748145-19748709 (-)
WSB/EiJ	ENSIUOG00005043525	lncRNA gene	Chr16:20066138-20066717 (-)

Homology

• Gene Tree
  Gm30693
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  81
• Gene trapped
  81
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  40
• RefSeq
  4

• Ensembl
  ENSMUSG00000120550 (Evidence)
• NCBI Gene
  102632687

Representative Sequences			Length	Strain/Species
genomic	102632687	NCBI Gene Model | MGI Sequence Detail	6526	C57BL/6J
transcript	KY467746	GenBank | ENA | DDBJ | MGI Sequence Detail	470	ZRU/MplStud

References

• Summaries
  All 6

  Phenotypes 3
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm30693:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr140539	Chr16:22918448-22918465 (-)	3,424 bp
Tssr140538	Chr16:22916767-22916771 (-)	5,112 bp