Gm30639 Gene Detail

Summary

• Symbol
  Gm30639
• Name
  predicted gene, 30639

• Feature Type
  lncRNA gene
• IDs
  MGI:5589798
  NCBI Gene: 102632609
• Alliance
  genome feature page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr9:66920090-66929510 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  252 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5589798	lncRNA gene	Chr9:66913085-66930239 (+)
129S1/SvImJ	ENSMUSG00200043916	lncRNA gene	Chr9:64018461-64028114 (+)
A/J	ENSMUSG00195027718	lncRNA gene	Chr9:63739543-63749162 (+)
AKR/J	ENSMUSG00220043442	lncRNA gene	Chr9:63877536-63887158 (+)
BALB/cJ	ENSMUSG00180020006	lncRNA gene	Chr9:63859067-63868690 (+)
C3H/HeJ	ENSMUSG00175013588	lncRNA gene	Chr9:63872760-63882378 (+)
C57BL/6NJ	ENSMUSG00215034192	lncRNA gene	Chr9:63862711-63872333 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005033429	lncRNA gene	Chr9:63771231-63779261 (+)
CBA/J	ENSMUSG00210014815	lncRNA gene	Chr9:63959841-63969458 (+)
DBA/2J	ENSMUSG00185035808	lncRNA gene	Chr9:63985081-63994773 (+)
FVB/NJ	ENSMUSG00205035839	lncRNA gene	Chr9:64302245-64311999 (+)
JF1/MsJ	ENSUMUG00000039339	lncRNA gene	Chr9:64057180-64066942 (+)
LP/J	ENSMUSG00230027763	lncRNA gene	Chr9:64217366-64227020 (+)
NOD/ShiLtJ	ENSMUSG00190023008	lncRNA gene	Chr9:64085204-64094893 (+)
NZO/HlLtJ	ENSMUSG00225046692	lncRNA gene	Chr9:64284705-64294391 (+)
PWK/PhJ	ENSLUMG00010028075	lncRNA gene	Chr9:64013840-64023491 (+)
SPRET/EiJ	ENSMSPG00010023004	lncRNA gene	Chr9:65078599-65088187 (+)
WSB/EiJ	ENSIUOG00005028452	lncRNA gene	Chr9:63473606-63483254 (+)

Homology

• Gene Tree
  Gm30639
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm30639
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Other Mouse Links
  GEO

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  2

• Ensembl
  ENSMUSG00000119960 (Evidence)
• NCBI Gene
  102632609

Representative Sequences			Length	Strain/Species
genomic	102632609	NCBI Gene Model | MGI Sequence Detail	9421	C57BL/6J
transcript	XR_004935824	RefSeq | MGI Sequence Detail	3385	C57BL/6J

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm30639:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr85781	Chr9:66919204-66919207 (+)	-884 bp
Tssr85782	Chr9:66920344-66920356 (+)	260 bp
Tssr85783	Chr9:66920363-66920374 (+)	279 bp
Tssr2921	Chr9:66927933-66927936 (+)	7,845 bp