Gm30603 Gene Detail

Summary

• Symbol
  Gm30603
• Name
  predicted gene, 30603

• Feature Type
  lncRNA gene
• IDs
  MGI:5589762
  NCBI Gene: 102632562
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr5:140574855-140582350 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  356 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5589762	lncRNA gene	Chr5:140574854-140583232 (-)
129S1/SvImJ	ENSMUSG00200042290	lncRNA gene	Chr5:134442306-134449832 (-)
A/J	ENSMUSG00195046146	lncRNA gene	Chr5:134066576-134074101 (-)
AKR/J	ENSMUSG00220023655	lncRNA gene	Chr5:133323429-133330974 (-)
BALB/cJ	ENSMUSG00180033317	lncRNA gene	Chr5:134167125-134174652 (-)
C3H/HeJ	ENSMUSG00175049016	lncRNA gene	Chr5:136087648-136095172 (-)
C57BL/6NJ	ENSMUSG00215040778	lncRNA gene	Chr5:134020908-134028432 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005036698	lncRNA gene	Chr5:133477861-133485168 (-)
CBA/J	ENSMUSG00210024164	lncRNA gene	Chr5:134904589-134912117 (-)
DBA/2J	ENSMUSG00185055098	lncRNA gene	Chr5:137920107-137927631 (-)
FVB/NJ	ENSMUSG00205045518	lncRNA gene	Chr5:133725157-133732685 (-)
JF1/MsJ	ENSUMUG00000054347	lncRNA gene	Chr5:140799739-140806988 (-)
LP/J	ENSMUSG00230031315	lncRNA gene	Chr5:142035816-142043340 (-)
NOD/ShiLtJ	ENSMUSG00190046582	lncRNA gene	Chr5:133862407-133869931 (-)
NZO/HlLtJ	ENSMUSG00225023999	lncRNA gene	Chr5:149510610-149518146 (-)
PWK/PhJ	ENSLUMG00010020776	lncRNA gene	Chr5:132522127-132529333 (-)
SPRET/EiJ	ENSMSPG00010039932	lncRNA gene	Chr5:136116868-136124958 (-)
WSB/EiJ	ENSIUOG00005039985	lncRNA gene	Chr5:136395715-136403248 (-)

Homology

• Gene Tree
  Gm30603
  

Sequences &
Gene Models

• All Sequences
  31
• RefSeq
  1

• Ensembl
  ENSMUSG00000120373 (Evidence)
• NCBI Gene
  102632562

Representative Sequences			Length	Strain/Species
genomic	102632562	NCBI Gene Model | MGI Sequence Detail	7496	C57BL/6J
transcript	XR_377167	RefSeq | MGI Sequence Detail	624	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm30603:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr54222	Chr5:140582338-140582358 (-)	2 bp
Tssr54221	Chr5:140582303-140582335 (-)	31 bp