Gm30571 Gene Detail

Summary

• Symbol
  Gm30571
• Name
  predicted gene, 30571

• Feature Type
  lncRNA gene
• IDs
  MGI:5589730
  NCBI Gene: 102632516
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr17:32131637-32132785 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  144 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5589730	lncRNA gene	Chr17:32131541-32132785 (+)
129S1/SvImJ	ENSMUSG00200054142	unclassified gene	Chr17:27811776-27812924 (+)
A/J	ENSMUSG00195054549	unclassified gene	Chr17:28751681-28752856 (+)
AKR/J	ENSMUSG00220054015	unclassified gene	Chr17:27779677-27780852 (+)
BALB/cJ	ENSMUSG00180051296	unclassified gene	Chr17:28085816-28086964 (+)
C3H/HeJ	ENSMUSG00175053978	unclassified gene	Chr17:27660845-27662020 (+)
C57BL/6NJ	ENSMUSG00215054464	unclassified gene	Chr17:27649651-27650799 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005050378	unclassified gene	Chr17:28666016-28667165 (+)
CBA/J	ENSMUSG00210051382	unclassified gene	Chr17:27487765-27488940 (+)
DBA/2J	ENSMUSG00185054380	unclassified gene	Chr17:30097786-30098934 (+)
FVB/NJ	ENSMUSG00205053325	unclassified gene	Chr17:27973015-27974167 (+)
JF1/MsJ	ENSUMUG00000057799	unclassified gene	Chr17:29394378-29395527 (+)
LP/J	ENSMUSG00230054653	unclassified gene	Chr17:31210292-31211440 (+)
NOD/ShiLtJ	ENSMUSG00190054371	unclassified gene	Chr17:27609756-27610907 (+)
NZO/HlLtJ	ENSMUSG00225054910	unclassified gene	Chr17:33247272-33248420 (+)
PWK/PhJ	ENSLUMG00010053489	unclassified gene	Chr17:27230010-27231158 (+)
SPRET/EiJ	ENSMSPG00010050556	unclassified gene	Chr17:28343587-28344740 (+)
WSB/EiJ	ENSIUOG00005052042	unclassified gene	Chr17:28362395-28363568 (+)

Homology

• Gene Tree
  Gm30571
  

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000117980 (Evidence)
• NCBI Gene
  102632516

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000117980	Ensembl Gene Model | MGI Sequence Detail	1149	C57BL/6J
transcript	AK081434	GenBank | ENA | DDBJ | MGI Sequence Detail	656	C57BL/6J

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 4
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm30571:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr143697	Chr17:32131631-32131647 (+)	2 bp
Tssr143698	Chr17:32131702-32131711 (+)	70 bp