Gm30541 Gene Detail

Summary

• Symbol
  Gm30541
• Name
  predicted gene, 30541

• Feature Type
  lncRNA gene
• IDs
  MGI:5589700
  NCBI Gene: 102632479
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr19:53295284-53314227 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  385 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5589700	lncRNA gene	Chr19:53294776-53315307 (-)
129S1/SvImJ	ENSMUSG00200021936	lncRNA gene	Chr19:49994073-49999224 (-)
A/J	ENSMUSG00195018158	lncRNA gene	Chr19:50168835-50173987 (-)
AKR/J	ENSMUSG00220019359	lncRNA gene	Chr19:49938658-49943810 (-)
BALB/cJ	ENSMUSG00180021924	lncRNA gene	Chr19:50408520-50413671 (-)
C3H/HeJ	ENSMUSG00175006522	lncRNA gene	Chr19:49944119-49949271 (-)
C57BL/6NJ	ENSMUSG00215004956	lncRNA gene	Chr19:50036251-50041397 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005016764	lncRNA gene	Chr19:49595876-49601018 (-)
CBA/J	ENSMUSG00210019249	lncRNA gene	Chr19:50023700-50028851 (-)
DBA/2J	ENSMUSG00185009183	lncRNA gene	Chr19:50522112-50527264 (-)
FVB/NJ	ENSMUSG00205035763	lncRNA gene	Chr19:49406964-49412107 (-)
JF1/MsJ	ENSUMUG00000045123	lncRNA gene	Chr19:50718105-50723230 (-)
LP/J	ENSMUSG00230028429	lncRNA gene	Chr19:51275788-51280940 (-)
NOD/ShiLtJ	ENSMUSG00190005750	lncRNA gene	Chr19:49884760-49889912 (-)
NZO/HlLtJ	ENSMUSG00225025682	lncRNA gene	Chr19:54878085-54883236 (-)
PWK/PhJ	ENSLUMG00010001388	lncRNA gene	Chr19:49770780-49775916 (-)
SPRET/EiJ	ENSMSPG00010008016	lncRNA gene	Chr19:49618029-49622977 (-)
WSB/EiJ	ENSIUOG00005007063	lncRNA gene	Chr19:49384188-49389330 (-)

Homology

• Gene Tree
  Gm30541
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  4
• Gene trapped
  4
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  36
• RefSeq
  6

• Ensembl
  ENSMUSG00000118369 (Evidence)
• NCBI Gene
  102632479

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118369	Ensembl Gene Model | MGI Sequence Detail	18944	C57BL/6J
transcript	ENSMUST00000237210	Ensembl | MGI Sequence Detail	2130	Not Applicable

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Gm30541:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr159814	Chr19:53306988-53307038 (-)	7,214 bp
Tssr159813	Chr19:53301723-53301741 (-)	12,495 bp
Tssr159812	Chr19:53301684-53301701 (-)	12,534 bp