Gm30539 Gene Detail

Summary

• Symbol
  Gm30539
• Name
  predicted gene, 30539
• Synonyms
  Gm49335

• Feature Type
  lncRNA gene
• IDs
  MGI:5589698
  NCBI Gene: 102632477
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr10:126793892-126796866 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  143 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5589698	lncRNA gene	Chr10:126793817-126799202 (+)
129S1/SvImJ	ENSMUSG00200013870	lncRNA gene	Chr10:123146520-123149606 (+)
A/J	ENSMUSG00195017018	lncRNA gene	Chr10:123610797-123613889 (+)
AKR/J	ENSMUSG00220006756	lncRNA gene	Chr10:123215154-123218240 (+)
BALB/cJ	ENSMUSG00180011450	lncRNA gene	Chr10:123601895-123604992 (+)
C3H/HeJ	ENSMUSG00175006179	lncRNA gene	Chr10:123599072-123602155 (+)
C57BL/6NJ	ENSMUSG00215021893	lncRNA gene	Chr10:123211938-123215029 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005041611	lncRNA gene	Chr10:122569443-122572414 (+)
CBA/J	ENSMUSG00210009340	lncRNA gene	Chr10:123423232-123426310 (+)
DBA/2J	ENSMUSG00185027783	lncRNA gene	Chr10:123569955-123573042 (+)
FVB/NJ	ENSMUSG00205025883	lncRNA gene	Chr10:122829743-122832826 (+)
JF1/MsJ	ENSUMUG00000047256	lncRNA gene	Chr10:124864587-124867370 (+)
LP/J	ENSMUSG00230034440	lncRNA gene	Chr10:125487006-125490097 (+)
NOD/ShiLtJ	ENSMUSG00190016282	lncRNA gene	Chr10:123652275-123655349 (+)
NZO/HlLtJ	ENSMUSG00225037886	lncRNA gene	Chr10:129694457-129697543 (+)
PWK/PhJ	ENSLUMG00010010538	lncRNA gene	Chr10:123324222-123327014 (+)
SPRET/EiJ	ENSMSPG00010037040	lncRNA gene	Chr10:125280210-125282967 (+)
WSB/EiJ	ENSIUOG00005009192	lncRNA gene	Chr10:123210656-123213757 (+)

Homology

• Gene Tree
  Gm30539
  

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  1

• Ensembl
  ENSMUSG00000112035 (Evidence)
• NCBI Gene
  102632477

Representative Sequences			Length	Strain/Species
genomic	102632477	NCBI Gene Model | MGI Sequence Detail	2975	C57BL/6J
transcript	NR_155763	RefSeq | MGI Sequence Detail	1686	ZRU/MplStud

Molecular
Reagents

• All nucleic 1

  cDNA 1

Other
Accession IDs

MGI:6121522

References

• Summaries
  All 5
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;