Gm30513 Gene Detail

Summary

• Symbol
  Gm30513
• Name
  predicted gene, 30513

• Feature Type
  lncRNA gene
• IDs
  MGI:5589672
  NCBI Gene: 102632441
• Alliance
  genome feature page
• Transcription Start Sites
  8 TSS

Location &
Maps

• Sequence Map
  Chr18:81967746-81970853 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  194 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5589672	lncRNA gene	Chr18:81956345-81977851 (-)
129S1/SvImJ	ENSMUSG00200029614	lncRNA gene	Chr18:79184814-79187722 (-)
A/J	ENSMUSG00195004918	lncRNA gene	Chr18:79278328-79281233 (-)
AKR/J	ENSMUSG00220017625	lncRNA gene	Chr18:79203524-79206429 (-)
BALB/cJ	ENSMUSG00180013826	lncRNA gene	Chr18:79848635-79851541 (-)
C3H/HeJ	ENSMUSG00175013233	lncRNA gene	Chr18:79388948-79391852 (-)
C57BL/6NJ	ENSMUSG00215031423	lncRNA gene	Chr18:78750804-78753709 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005028376	lncRNA gene	Chr18:78308026-78310733 (-)
CBA/J	ENSMUSG00210034892	lncRNA gene	Chr18:79339387-79342292 (-)
DBA/2J	ENSMUSG00185011517	lncRNA gene	Chr18:79244672-79247577 (-)
FVB/NJ	ENSMUSG00205017027	lncRNA gene	Chr18:78652740-78655645 (-)
JF1/MsJ	ENSUMUG00000034956	lncRNA gene	Chr18:79144713-79147638 (-)
LP/J	ENSMUSG00230013438	lncRNA gene	Chr18:81289835-81292743 (-)
NOD/ShiLtJ	ENSMUSG00190024420	lncRNA gene	Chr18:79051731-79054636 (-)
NZO/HlLtJ	ENSMUSG00225034378	lncRNA gene	Chr18:81160580-81163485 (-)
PWK/PhJ	ENSLUMG00010007130	lncRNA gene	Chr18:79532803-79535733 (-)
SPRET/EiJ	ENSMSPG00010008936	lncRNA gene	Chr18:79915265-79918172 (-)
WSB/EiJ	ENSIUOG00005007892	lncRNA gene	Chr18:78709138-78712045 (-)

Homology

• Gene Tree
  Gm30513
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Transposon induced
  1
• Genomic Mutations
  1 involving Gm30513
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  49
• RefSeq
  2

• Ensembl
  ENSMUSG00000120297 (Evidence)
• NCBI Gene
  102632441

Representative Sequences			Length	Strain/Species
genomic	102632441	NCBI Gene Model | MGI Sequence Detail	3108	C57BL/6J
transcript	XR_386397	RefSeq | MGI Sequence Detail	1549	C57BL/6J

References

• Summaries
  All 4

  Phenotypes 1
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:175597 Overbeek PA, Direct Data Submission for Overbeek Lentiviral Transgenic Lines. MGI Direct Data Submission. 2011;

TSS for Gm30513:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr154072	Chr18:81970923-81970924 (-)	-71 bp
Tssr154071	Chr18:81970902-81970911 (-)	-54 bp
Tssr154070	Chr18:81970884-81970887 (-)	-33 bp
Tssr154069	Chr18:81970859-81970877 (-)	-15 bp
Tssr154068	Chr18:81970852-81970855 (-)	-1 bp
Tssr154067	Chr18:81970690-81970699 (-)	158 bp
Tssr154066	Chr18:81970635-81970646 (-)	212 bp
Tssr154065	Chr18:81970421-81970456 (-)	414 bp