Gm30504 Gene Detail

Summary

• Symbol
  Gm30504
• Name
  predicted gene, 30504
• Synonyms
  Gm45373

• Feature Type
  lncRNA gene
• IDs
  MGI:5589663
  NCBI Gene: 102632429
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr8:45561568-45649634 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  2717 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5589663	lncRNA gene	Chr8:45561568-45796774 (+)
129S1/SvImJ	ENSMUSG00200006713	lncRNA gene	Chr8:40684471-40770531 (+)
A/J	ENSMUSG00195004501	lncRNA gene	Chr8:41167381-41253453 (+)
AKR/J	ENSMUSG00220004520	lncRNA gene	Chr8:40984089-41070157 (+)
BALB/cJ	ENSMUSG00180002938	lncRNA gene	Chr8:40708630-40794716 (+)
C3H/HeJ	ENSMUSG00175005321	lncRNA gene	Chr8:40836773-40922831 (+)
C57BL/6NJ	ENSMUSG00215010751	lncRNA gene	Chr8:40639528-40725589 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005019771	lncRNA gene	Chr8:40693696-40785374 (+)
CBA/J	ENSMUSG00210019326	lncRNA gene	Chr8:40726539-40812597 (+)
DBA/2J	ENSMUSG00185006331	lncRNA gene	Chr8:46579259-46665322 (+)
FVB/NJ	ENSMUSG00205002307	lncRNA gene	Chr8:39863488-39949564 (+)
JF1/MsJ	ENSUMUG00000016159	lncRNA gene	Chr8:48270959-48346683 (+)
LP/J	ENSMUSG00230018568	lncRNA gene	Chr8:50272049-50358094 (+)
NOD/ShiLtJ	ENSMUSG00190006131	lncRNA gene	Chr8:40752404-40838468 (+)
NZO/HlLtJ	ENSMUSG00225012013	lncRNA gene	Chr8:53874805-53960887 (+)
PWK/PhJ	ENSLUMG00010009545	lncRNA gene	Chr8:40529918-40613727 (+)
SPRET/EiJ	ENSMSPG00010006212	lncRNA gene	Chr8:41410369-41483947 (+)
WSB/EiJ	ENSIUOG00005002547	lncRNA gene	Chr8:41591829-41677215 (+)

Homology

• Gene Tree
  Gm30504
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm30504
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  54
• RefSeq
  5

• Ensembl
  ENSMUSG00000110260 (Evidence)
• NCBI Gene
  102632429

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000110260	Ensembl Gene Model | MGI Sequence Detail	88067	C57BL/6J
transcript	ENSMUST00000292228	Ensembl | MGI Sequence Detail	3712	Not Applicable

Other
Accession IDs

MGI:5791209

References

• Summaries
  All 7

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm30504:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr77127	Chr8:45639759-45639768 (+)	78,196 bp