Timcc-ps1 Pseudogene Detail

Summary

• Symbol
  Timcc-ps1
• Name
  TIM double twin CX3C motif chaperone, pseudogene 1
• Synonyms
  Fam136a-ps, Gm30502

• Feature Type
  pseudogene
• IDs
  MGI:5589661
  NCBI Gene: 102632427
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr8:4702064-4702477 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  103 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5589661	pseudogene	Chr8:4701903-4703615 (+)
129S1/SvImJ	ENSMUSG00200013175	pseudogene	Chr8:1539404-1539808 (+)
A/J	ENSMUSG00195010530	pseudogene	Chr8:1931809-1932222 (+)
AKR/J	ENSMUSG00220011454	pseudogene	Chr8:1652199-1652612 (+)
BALB/cJ	ENSMUSG00180005087	pseudogene	Chr8:1579451-1579864 (+)
C3H/HeJ	ENSMUSG00175008646	pseudogene	Chr8:1692584-1692997 (+)
C57BL/6NJ	ENSMUSG00215008640	pseudogene	Chr8:1611594-1612007 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005020511	pseudogene	Chr8:1619307-1619711 (+)
CBA/J	ENSMUSG00210011448	pseudogene	Chr8:1571330-1571743 (+)
DBA/2J	ENSMUSG00185004047	pseudogene	Chr8:1706158-1706571 (+)
FVB/NJ	ENSMUSG00205005731	pseudogene	Chr8:1635631-1636044 (+)
JF1/MsJ	ENSUMUG00000042435	pseudogene	Chr8:1672554-1672958 (+)
LP/J	ENSMUSG00230008031	pseudogene	Chr8:3875666-3876079 (+)
NOD/ShiLtJ	ENSMUSG00190012107	pseudogene	Chr8:1680182-1680595 (+)
NZO/HlLtJ	ENSMUSG00225019829	pseudogene	Chr8:11731745-11732158 (+)
PWK/PhJ	ENSLUMG00010010915	pseudogene	Chr8:1594887-1595291 (+)
SPRET/EiJ	ENSMSPG00010018420	pseudogene	Chr8:1515333-1515746 (+)
WSB/EiJ	ENSIUOG00005005178	pseudogene	Chr8:1619235-1619648 (+)

Homology

• Gene Tree
  Timcc-ps1
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  3

• Ensembl
  ENSMUSG00000109448 (Evidence)
• NCBI Gene
  102632427

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000109448	Ensembl Gene Model | MGI Sequence Detail	414	C57BL/6J
transcript	ENSMUST00000208203	Ensembl | MGI Sequence Detail	414	Not Applicable

Other
Accession IDs

MGI:5753800, MGI:7861776, MGI:8327596

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;