Gm30487 Gene Detail

Summary

• Symbol
  Gm30487
• Name
  predicted gene, 30487

• Feature Type
  lncRNA gene
• IDs
  MGI:5589646
  NCBI Gene: 102632408
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr4:106321826-106334585 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  633 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5589646	lncRNA gene	Chr4:106321428-106336204 (+)
129S1/SvImJ	ENSMUSG00200030562	lncRNA gene	Chr4:101381110-101391793 (+)
A/J	ENSMUSG00195047199	lncRNA gene	Chr4:101924831-101935496 (+)
AKR/J	ENSMUSG00220006943	lncRNA gene	Chr4:101327905-101338604 (+)
BALB/cJ	ENSMUSG00180035150	lncRNA gene	Chr4:100768060-100778892 (+)
C3H/HeJ	ENSMUSG00175015468	lncRNA gene	Chr4:101772623-101783462 (+)
C57BL/6NJ	ENSMUSG00215019908	lncRNA gene	Chr4:101653262-101664184 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005007831	lncRNA gene	Chr4:100872209-100882673 (+)
CBA/J	ENSMUSG00210029289	lncRNA gene	Chr4:101405615-101416447 (+)
DBA/2J	ENSMUSG00185022812	lncRNA gene	Chr4:102099090-102110001 (+)
FVB/NJ	ENSMUSG00205015673	lncRNA gene	Chr4:100335525-100346192 (+)
JF1/MsJ	ENSUMUG00000042581	lncRNA gene	Chr4:102117138-102127492 (+)
LP/J	ENSMUSG00230009989	lncRNA gene	Chr4:105417608-105428274 (+)
NOD/ShiLtJ	ENSMUSG00190032350	lncRNA gene	Chr4:100772213-100782909 (+)
NZO/HlLtJ	ENSMUSG00225033003	lncRNA gene	Chr4:110518118-110528981 (+)
PWK/PhJ	ENSLUMG00010018639	lncRNA gene	Chr4:99832117-99842436 (+)
SPRET/EiJ	ENSMSPG00010028877	lncRNA gene	Chr4:102080112-102090767 (+)
WSB/EiJ	ENSIUOG00005003310	lncRNA gene	Chr4:100982734-100993612 (+)

Homology

• Gene Tree
  Gm30487
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  2
• Radiation induced
  1
• Targeted
  1
• Genomic Mutations
  4 involving Gm30487
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  50
• RefSeq
  5

• Ensembl
  ENSMUSG00000120579 (Evidence)
• NCBI Gene
  102632408

Representative Sequences			Length	Strain/Species
genomic	102632408	NCBI Gene Model | MGI Sequence Detail	12760	C57BL/6J
transcript	XR_376501	RefSeq | MGI Sequence Detail	3344	C57BL/6J

References

• Summaries
  All 9

  Phenotypes 6
• Earliest
  J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8
• Latest
  J:148802 Boles MK, et al., A mouse chromosome 4 balancer ENU-mutagenesis screen isolates eleven lethal lines. BMC Genet. 2009;10:12

TSS for Gm30487:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr38175	Chr4:106321425-106321429 (+)	-399 bp
Tssr1251	Chr4:106321650-106321663 (+)	-169 bp