Gm30476 Gene Detail

Summary

• Symbol
  Gm30476
• Name
  predicted gene, 30476

• Feature Type
  lncRNA gene
• IDs
  MGI:5589635
  NCBI Gene: 102632391
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr17:73344086-73344806 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  137 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5589635	lncRNA gene	Chr17:73303746-73345252 (+)
129S1/SvImJ	ENSMUSG00200039172	lncRNA gene	Chr17:68634994-68635738 (+)
A/J	ENSMUSG00195019032	lncRNA gene	Chr17:70032629-70033373 (+)
AKR/J	ENSMUSG00220018624	lncRNA gene	Chr17:69077905-69078649 (+)
BALB/cJ	ENSMUSG00180022137	lncRNA gene	Chr17:69766197-69766941 (+)
C3H/HeJ	ENSMUSG00175030872	lncRNA gene	Chr17:69025859-69026603 (+)
C57BL/6NJ	ENSMUSG00215033420	lncRNA gene	Chr17:68762361-68763105 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005027058	lncRNA gene	Chr17:69581942-69582685 (+)
CBA/J	ENSMUSG00210031031	lncRNA gene	Chr17:68895646-68896390 (+)
DBA/2J	ENSMUSG00185013242	lncRNA gene	Chr17:71728678-71729422 (+)
FVB/NJ	ENSMUSG00205018295	lncRNA gene	Chr17:69531234-69531978 (+)
JF1/MsJ	ENSUMUG00000022554	lncRNA gene	Chr17:71370611-71371351 (+)
LP/J	ENSMUSG00230022405	lncRNA gene	Chr17:72692192-72692936 (+)
NOD/ShiLtJ	ENSMUSG00190037930	lncRNA gene	Chr17:68781619-68782363 (+)
NZO/HlLtJ	ENSMUSG00225028989	lncRNA gene	Chr17:74975295-74976039 (+)
PWK/PhJ	ENSLUMG00010030933	lncRNA gene	Chr17:68603627-68604371 (+)
SPRET/EiJ	ENSMSPG00010017265	lncRNA gene	Chr17:68949107-68949852 (+)
WSB/EiJ	ENSIUOG00005032735	lncRNA gene	Chr17:69747613-69748357 (+)

Homology

• Gene Tree
  Gm30476
  

Sequences &
Gene Models

• All Sequences
  52
• RefSeq
  1

• Ensembl
  ENSMUSG00000120305 (Evidence)
• NCBI Gene
  102632391

Representative Sequences			Length	Strain/Species
genomic	102632391	NCBI Gene Model | MGI Sequence Detail	721	C57BL/6J
transcript	NR_169083	RefSeq | MGI Sequence Detail	478	ZRU/MplStud

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm30476:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr145796	Chr17:73344083-73344120 (+)	16 bp