Gm30472 Gene Detail

Summary

• Symbol
  Gm30472
• Name
  predicted gene, 30472

• Feature Type
  lncRNA gene
• IDs
  MGI:5589631
  NCBI Gene: 102632385
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:156040681-156051517 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  462 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5589631	lncRNA gene	Chr1:156040614-156051835 (+)
129S1/SvImJ	ENSMUSG00200006647	lncRNA gene	Chr1:153482653-153493780 (+)
A/J	ENSMUSG00195023466	lncRNA gene	Chr1:152869470-152880661 (+)
AKR/J	ENSMUSG00220006216	lncRNA gene	Chr1:152668767-152679958 (+)
BALB/cJ	ENSMUSG00180033855	lncRNA gene	Chr1:153088642-153099831 (+)
C3H/HeJ	ENSMUSG00175002906	lncRNA gene	Chr1:153133054-153144243 (+)
C57BL/6NJ	ENSMUSG00215040449	lncRNA gene	Chr1:153026861-153037989 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005006006	lncRNA gene	Chr1:151683185-151694334 (+)
CBA/J	ENSMUSG00210021796	lncRNA gene	Chr1:153031154-153042343 (+)
DBA/2J	ENSMUSG00185048607	lncRNA gene	Chr1:157307837-157319022 (+)
FVB/NJ	ENSMUSG00205029818	lncRNA gene	Chr1:152163545-152174736 (+)
JF1/MsJ	ENSUMUG00000023701	lncRNA gene	Chr1:156459797-156470991 (+)
LP/J	ENSMUSG00230017003	lncRNA gene	Chr1:156872692-156883816 (+)
NOD/ShiLtJ	ENSMUSG00190041611	lncRNA gene	Chr1:152879314-152890504 (+)
NZO/HlLtJ	ENSMUSG00225006500	lncRNA gene	Chr1:160544063-160554691 (+)
PWK/PhJ	ENSLUMG00010031288	lncRNA gene	Chr1:151817954-151829123 (+)
SPRET/EiJ	ENSMSPG00010042853	lncRNA gene	Chr1:155169549-155180669 (+)
WSB/EiJ	ENSIUOG00005024159	lncRNA gene	Chr1:152461231-152472355 (+)

Homology

• Gene Tree
  Gm30472
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  2
• Genomic Mutations
  2 involving Gm30472
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  3

• Ensembl
  ENSMUSG00000120654 (Evidence)
• NCBI Gene
  102632385

Representative Sequences			Length	Strain/Species
genomic	102632385	NCBI Gene Model | MGI Sequence Detail	10837	C57BL/6J
transcript	XR_373630	RefSeq | MGI Sequence Detail	815	C57BL/6J

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm30472:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr9558	Chr1:156040704-156040734 (+)	38 bp