Gm30455 Gene Detail

Summary

• Symbol
  Gm30455
• Name
  predicted gene, 30455

• Feature Type
  lncRNA gene
• IDs
  MGI:5589614
  NCBI Gene: 115489503
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:180363450-180368571 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  134 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5589614	lncRNA gene	Chr2:180361947-180368571 (-)
129S1/SvImJ	ENSMUSG00200002522	lncRNA gene	Chr2:176384002-176390614 (-)
A/J	ENSMUSG00195001163	lncRNA gene	Chr2:176621642-176628253 (-)
AKR/J	ENSMUSG00220000120	lncRNA gene	Chr2:174300211-174306822 (-)
BALB/cJ	ENSMUSG00180000705	lncRNA gene	Chr2:174424190-174430808 (-)
C3H/HeJ	ENSMUSG00175004502	lncRNA gene	Chr2:175582235-175588846 (-)
C57BL/6NJ	ENSMUSG00215002636	lncRNA gene	Chr2:174523434-174530046 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005000864	lncRNA gene	Chr2:173873183-173879798 (-)
CBA/J	ENSMUSG00210001502	lncRNA gene	Chr2:174901968-174908580 (-)
DBA/2J	ENSMUSG00185021315	lncRNA gene	Chr2:176141651-176148262 (-)
FVB/NJ	ENSMUSG00205002509	lncRNA gene	Chr2:174953779-174960393 (-)
JF1/MsJ	ENSUMUG00000035240	lncRNA gene	Chr2:177319892-177326515 (-)
LP/J	ENSMUSG00230026936	lncRNA gene	Chr2:178034956-178041568 (-)
NOD/ShiLtJ	ENSMUSG00190016577	lncRNA gene	Chr2:174443566-174450178 (-)
NZO/HlLtJ	ENSMUSG00225006962	lncRNA gene	Chr2:186122207-186128818 (-)
PWK/PhJ	ENSLUMG00010000383	lncRNA gene	Chr2:174746473-174753099 (-)
SPRET/EiJ	ENSMSPG00010004172	lncRNA gene	Chr2:177228584-177235207 (-)
WSB/EiJ	ENSIUOG00005000231	lncRNA gene	Chr2:174466916-174473527 (-)

Homology

• Gene Tree
  Gm30455
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  4
• Gene trapped
  4
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  1

• Ensembl
  ENSMUSG00000121095 (Evidence)
• NCBI Gene
  115489503

Representative Sequences			Length	Strain/Species
genomic	115489503	NCBI Gene Model | MGI Sequence Detail	5122	C57BL/6J
transcript	XR_003953988	RefSeq | MGI Sequence Detail	4283	C57BL/6J

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm30455:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr28134	Chr2:180368554-180368559 (-)	14 bp