Gm30439 Gene Detail

Summary

• Symbol
  Gm30439
• Name
  predicted gene, 30439

• Feature Type
  lncRNA gene
• IDs
  MGI:5589598
  NCBI Gene: 102632340
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr14:111818087-111912947 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  3648 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5589598	lncRNA gene	Chr14:111677695-111913035 (-)
129S1/SvImJ	ENSMUSG00200018059	lncRNA gene	Chr14:100639697-100803070 (-)
A/J	ENSMUSG00195004232	lncRNA gene	Chr14:100417936-100581382 (-)
AKR/J	ENSMUSG00220001158	lncRNA gene	Chr14:100171421-100334857 (-)
BALB/cJ	ENSMUSG00180010715	lncRNA gene	Chr14:99898106-100063518 (-)
C3H/HeJ	ENSMUSG00175013971	lncRNA gene	Chr14:101828957-101994348 (-)
C57BL/6NJ	ENSMUSG00215007449	lncRNA gene	Chr14:100009561-100174954 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005002839	lncRNA gene	Chr14:101631433-101801865 (-)
CBA/J	ENSMUSG00210014014	lncRNA gene	Chr14:100802600-100968025 (-)
DBA/2J	ENSMUSG00185021399	lncRNA gene	Chr14:105953981-106119372 (-)
FVB/NJ	ENSMUSG00205008603	lncRNA gene	Chr14:99581683-99745111 (-)
JF1/MsJ	ENSUMUG00000012063	lncRNA gene	Chr14:117048425-117229309 (-)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190001878	lncRNA gene	Chr14:100637028-100817822 (-)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010001135	lncRNA gene	Chr14:99893805-100087781 (-)
SPRET/EiJ	ENSMSPG00010012636	lncRNA gene	Chr14:103997697-104181457 (-)
WSB/EiJ	ENSIUOG00005006487	lncRNA gene	Chr14:99818057-99986620 (-)

Homology

• Gene Tree
  Gm30439
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm30439
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  81
• RefSeq
  9

• Ensembl
  ENSMUSG00000120285 (Evidence)
• NCBI Gene
  102632340

Representative Sequences			Length	Strain/Species
genomic	102632340	NCBI Gene Model | MGI Sequence Detail	94861	C57BL/6J
transcript	XR_003951225	RefSeq | MGI Sequence Detail	9142	C57BL/6J

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm30439:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr130188	Chr14:111912190-111912246 (-)	729 bp
Tssr130187	Chr14:111912118-111912133 (-)	821 bp