Gm30431 Gene Detail

Summary

• Symbol
  Gm30431
• Name
  predicted gene, 30431

• Feature Type
  lncRNA gene
• IDs
  MGI:5589590
  NCBI Gene: 102632331
• Alliance
  genome feature page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr1:95595414-95599317 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  180 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5589590	lncRNA gene	Chr1:95595414-95605010 (+)
129S1/SvImJ	ENSMUSG00200000250	lncRNA gene	Chr1:92735751-92739641 (+)
A/J	ENSMUSG00195000348	lncRNA gene	Chr1:92305012-92308905 (+)
AKR/J	ENSMUSG00220000224	lncRNA gene	Chr1:92527020-92530913 (+)
BALB/cJ	ENSMUSG00180005845	lncRNA gene	Chr1:92612803-92616696 (+)
C3H/HeJ	ENSMUSG00175005621	lncRNA gene	Chr1:92512942-92516835 (+)
C57BL/6NJ	ENSMUSG00215000346	lncRNA gene	Chr1:92501178-92505071 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005000165	lncRNA gene	Chr1:92259278-92263163 (+)
CBA/J	ENSMUSG00210000117	lncRNA gene	Chr1:92362966-92366859 (+)
DBA/2J	ENSMUSG00185014298	lncRNA gene	Chr1:96798118-96802006 (+)
FVB/NJ	ENSMUSG00205000858	lncRNA gene	Chr1:91727627-91731521 (+)
JF1/MsJ	ENSUMUG00000024296	lncRNA gene	Chr1:95577435-95581320 (+)
LP/J	ENSMUSG00230024090	lncRNA gene	Chr1:96061777-96065665 (+)
NOD/ShiLtJ	ENSMUSG00190000413	lncRNA gene	Chr1:92375515-92379403 (+)
NZO/HlLtJ	ENSMUSG00225003819	lncRNA gene	Chr1:99975945-99979825 (+)
PWK/PhJ	ENSLUMG00010006624	lncRNA gene	Chr1:91981750-91985624 (+)
SPRET/EiJ	ENSMSPG00010000806	lncRNA gene	Chr1:93998950-94002780 (+)
WSB/EiJ	ENSIUOG00005000295	lncRNA gene	Chr1:92045058-92048949 (+)

Homology

• Gene Tree
  Gm30431
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm30431
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000121039 (Evidence)
• NCBI Gene
  102632331

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121039	Ensembl Gene Model | MGI Sequence Detail	3904	C57BL/6J
transcript	ENSMUST00000246959	Ensembl | MGI Sequence Detail	650	Not Applicable

References

• Summaries
  All 7

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:7938 Juriloff DM, et al., Genetic and developmental studies of a new mouse mutation that produces otocephaly. J Craniofac Genet Dev Biol. 1985;5(2):121-45

TSS for Gm30431:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr8223	Chr1:95595416-95595453 (+)	21 bp
Tssr8224	Chr1:95595506-95595538 (+)	108 bp
Tssr8225	Chr1:95595558-95595570 (+)	150 bp
Tssr8226	Chr1:95596210-95596213 (+)	798 bp