Gm30409 Gene Detail

Summary

• Symbol
  Gm30409
• Name
  predicted gene, 30409

• Feature Type
  lncRNA gene
• IDs
  MGI:5589568
  NCBI Gene: 102632297
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr13:63275260-63282327 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  217 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5589568	lncRNA gene	Chr13:63264806-63282330 (+)
129S1/SvImJ	ENSMUSG00200017463	lncRNA gene	Chr13:59412676-59413136 (+)
A/J	ENSMUSG00195045441	lncRNA gene	Chr13:59578423-59578883 (+)
AKR/J	ENSMUSG00220045452	lncRNA gene	Chr13:58631764-58632224 (+)
BALB/cJ	ENSMUSG00180018761	lncRNA gene	Chr13:59878365-59878825 (+)
C3H/HeJ	ENSMUSG00175044413	lncRNA gene	Chr13:59689673-59690133 (+)
C57BL/6NJ	ENSMUSG00215040885	lncRNA gene	Chr13:59692131-59692591 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005042651	lncRNA gene	Chr13:60093883-60094357 (+)
CBA/J	ENSMUSG00210044419	lncRNA gene	Chr13:59889117-59889577 (+)
DBA/2J	ENSMUSG00185008771	lncRNA gene	Chr13:60737608-60738068 (+)
FVB/NJ	ENSMUSG00205045681	lncRNA gene	Chr13:58865895-58866355 (+)
JF1/MsJ	ENSUMUG00000037121	lncRNA gene	Chr13:60365744-60366218 (+)
LP/J	ENSMUSG00230036210	lncRNA gene	Chr13:70081868-70082328 (+)
NOD/ShiLtJ	ENSMUSG00190039145	lncRNA gene	Chr13:59647019-59647479 (+)
NZO/HlLtJ	ENSMUSG00225047613	lncRNA gene	Chr13:63789015-63789475 (+)
PWK/PhJ	ENSLUMG00010024238	lncRNA gene	Chr13:59198925-59199399 (+)
SPRET/EiJ	ENSMSPG00010043615	lncRNA gene	Chr13:59422702-59423176 (+)
WSB/EiJ	ENSIUOG00005026826	lncRNA gene	Chr13:58377802-58378262 (+)

Homology

• Gene Tree
  Gm30409
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm30409
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  1

• Ensembl
  ENSMUSG00000113257 (Evidence)
• NCBI Gene
  102632297

Representative Sequences			Length	Strain/Species
genomic	102632297	NCBI Gene Model | MGI Sequence Detail	7068	C57BL/6J
transcript	XR_003950671	RefSeq | MGI Sequence Detail	6836	C57BL/6J

References

• Summaries
  All 6

  Phenotypes 3
• Earliest
  J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69