Gm30400 Gene Detail

Summary

• Symbol
  Gm30400
• Name
  predicted gene, 30400
• Synonyms
  Gm45414

• Feature Type
  lncRNA gene
• IDs
  MGI:5589559
  NCBI Gene: 102632284
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr10:78582964-78603419 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  670 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5589559	lncRNA gene	Chr10:78582964-78608189 (+)
129S1/SvImJ	ENSMUSG00200051501	lncRNA gene	Chr10:75261086-75281541 (+)
A/J	ENSMUSG00195050220	lncRNA gene	Chr10:75597844-75618307 (+)
AKR/J	ENSMUSG00220049513	lncRNA gene	Chr10:75257518-75277979 (+)
BALB/cJ	ENSMUSG00180053132	lncRNA gene	Chr10:75612169-75632626 (+)
C3H/HeJ	ENSMUSG00175052630	lncRNA gene	Chr10:75483300-75503755 (+)
C57BL/6NJ	ENSMUSG00215053142	lncRNA gene	Chr10:75221054-75241510 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005052279	lncRNA gene	Chr10:75104435-75125102 (+)
CBA/J	ENSMUSG00210050532	lncRNA gene	Chr10:75339423-75359875 (+)
DBA/2J	ENSMUSG00185053817	lncRNA gene	Chr10:75681798-75702263 (+)
FVB/NJ	ENSMUSG00205052372	lncRNA gene	Chr10:75371429-75391878 (+)
JF1/MsJ	ENSUMUG00000056150	lncRNA gene	Chr10:76847300-76879742 (+)
LP/J	ENSMUSG00230051467	lncRNA gene	Chr10:77451122-77471577 (+)
NOD/ShiLtJ	ENSMUSG00190052712	lncRNA gene	Chr10:75659156-75679612 (+)
NZO/HlLtJ	ENSMUSG00225052812	lncRNA gene	Chr10:81738084-81758537 (+)
PWK/PhJ	ENSLUMG00010051593	lncRNA gene	Chr10:75231874-75267486 (+)
SPRET/EiJ	ENSMSPG00010048330	lncRNA gene	Chr10:77031001-77053684 (+)
WSB/EiJ	ENSIUOG00005051657	lncRNA gene	Chr10:75282079-75302524 (+)

Homology

• Gene Tree
  Gm30400
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm30400
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  1

• Ensembl
  ENSMUSG00000109776 (Evidence)
• NCBI Gene
  102632284

Representative Sequences			Length	Strain/Species
genomic	102632284	NCBI Gene Model | MGI Sequence Detail	20456	C57BL/6J
transcript	NR_155762	RefSeq | MGI Sequence Detail	2115	ZRU/MplStud

Molecular
Reagents

• All nucleic 2

  cDNA 2

Other
Accession IDs

MGI:5791250

References

• Summaries
  All 11

  Phenotypes 5
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87