Gm30381 Gene Detail

Summary

• Symbol
  Gm30381
• Name
  predicted gene, 30381

• Feature Type
  lncRNA gene
• IDs
  MGI:5589540
  NCBI Gene: 102632253
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr19:53117134-53120219 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  149 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5589540	lncRNA gene	Chr19:53117068-53120224 (+)
129S1/SvImJ	ENSMUSG00200021945	lncRNA gene	Chr19:49802102-49805239 (+)
A/J	ENSMUSG00195018196	lncRNA gene	Chr19:49976852-49979985 (+)
AKR/J	ENSMUSG00220019368	lncRNA gene	Chr19:49746752-49749795 (+)
BALB/cJ	ENSMUSG00180021963	lncRNA gene	Chr19:50216547-50219680 (+)
C3H/HeJ	ENSMUSG00175006526	lncRNA gene	Chr19:49752137-49755268 (+)
C57BL/6NJ	ENSMUSG00215004959	lncRNA gene	Chr19:49844264-49847371 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005016771	lncRNA gene	Chr19:49403711-49406812 (+)
CBA/J	ENSMUSG00210019259	lncRNA gene	Chr19:49831706-49834837 (+)
DBA/2J	ENSMUSG00185009196	lncRNA gene	Chr19:50330124-50333253 (+)
FVB/NJ	ENSMUSG00205035856	lncRNA gene	Chr19:49214973-49218084 (+)
JF1/MsJ	ENSUMUG00000045205	lncRNA gene	Chr19:50525345-50528479 (+)
LP/J	ENSMUSG00230028344	lncRNA gene	Chr19:51083831-51086968 (+)
NOD/ShiLtJ	ENSMUSG00190005754	lncRNA gene	Chr19:49692780-49695889 (+)
NZO/HlLtJ	ENSMUSG00225025609	lncRNA gene	Chr19:54686107-54689244 (+)
PWK/PhJ	ENSLUMG00010001390	lncRNA gene	Chr19:49578040-49581150 (+)
SPRET/EiJ	ENSMSPG00010008024	lncRNA gene	Chr19:49426017-49429095 (+)
WSB/EiJ	ENSIUOG00005007071	lncRNA gene	Chr19:49185586-49188665 (+)

Homology

• Gene Tree
  Gm30381
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  1

• Ensembl
  ENSMUSG00000118233 (Evidence)
• NCBI Gene
  102632253

Representative Sequences			Length	Strain/Species
genomic	102632253	NCBI Gene Model | MGI Sequence Detail	3086	C57BL/6J
transcript	NR_166769	RefSeq | MGI Sequence Detail	1095	ZRU/MplStud

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Gm30381:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr156938	Chr19:53117129-53117139 (+)	0 bp
Tssr156939	Chr19:53119684-53119685 (+)	2,551 bp