Gm30339 Gene Detail

Summary

• Symbol
  Gm30339
• Name
  predicted gene, 30339

• Feature Type
  lncRNA gene
• IDs
  MGI:5589498
  NCBI Gene: 102632199
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr15:93604330-93639735 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1130 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5589498	lncRNA gene	Chr15:93596952-93639735 (+)
129S1/SvImJ	ENSMUSG00200035937	lncRNA gene	Chr15:90778882-90782942 (+)
A/J	ENSMUSG00195021450	lncRNA gene	Chr15:90675909-90679969 (+)
AKR/J	ENSMUSG00220033005	lncRNA gene	Chr15:90726592-90730652 (+)
BALB/cJ	ENSMUSG00180015447	lncRNA gene	Chr15:90560667-90564744 (+)
C3H/HeJ	ENSMUSG00175029925	lncRNA gene	Chr15:90862241-90866301 (+)
C57BL/6NJ	ENSMUSG00215031456	lncRNA gene	Chr15:90668876-90672953 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005031432	lncRNA gene	Chr15:90160543-90164635 (+)
CBA/J	ENSMUSG00210013320	lncRNA gene	Chr15:90643690-90647750 (+)
DBA/2J	ENSMUSG00185022950	lncRNA gene	Chr15:90691828-90695888 (+)
FVB/NJ	ENSMUSG00205037525	lncRNA gene	Chr15:90395710-90399770 (+)
JF1/MsJ	ENSUMUG00000042408	lncRNA gene	Chr15:90194426-90198587 (+)
LP/J	ENSMUSG00230041640	lncRNA gene	Chr15:94016879-94020939 (+)
NOD/ShiLtJ	ENSMUSG00190031759	lncRNA gene	Chr15:90685778-90689838 (+)
NZO/HlLtJ	ENSMUSG00225044134	lncRNA gene	Chr15:94315062-94319122 (+)
PWK/PhJ	ENSLUMG00010035063	lncRNA gene	Chr15:90343752-90347812 (+)
SPRET/EiJ	ENSMSPG00010014619	lncRNA gene	Chr15:92154217-92158507 (+)
WSB/EiJ	ENSIUOG00005011308	lncRNA gene	Chr15:90781730-90785785 (+)

Homology

• Gene Tree
  Gm30339
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  8 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm30339
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  30
• RefSeq
  5

• Ensembl
  ENSMUSG00000116237 (Evidence)
• NCBI Gene
  102632199

Representative Sequences			Length	Strain/Species
genomic	102632199	NCBI Gene Model | MGI Sequence Detail	35406	C57BL/6J
transcript	AK035352	GenBank | ENA | DDBJ | MGI Sequence Detail	2538	C57BL/6J

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 12

  Diseases 1

  Phenotypes 8
• Earliest
  J:103253 Peters J, et al., Koala, Koa, is associated with an inversion on mouse Chromosome 15. Genet Res. 1992;59:237-8 (Abstract)
• Latest
  J:155838 Katayama K, et al., Characterization of the chromosomal inversion associated with the Koa mutation in the mouse revealed the cause of skeletal abnormalities. BMC Genet. 2009;10:60