Gm30307 Gene Detail

Summary

• Symbol
  Gm30307
• Name
  predicted gene, 30307

• Feature Type
  lncRNA gene
• IDs
  MGI:5589466
  NCBI Gene: 102632160
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr1:43235975-43306593 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  2232 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5589466	lncRNA gene	Chr1:43235975-43306593 (+)
129S1/SvImJ	ENSMUSG00200002079	lncRNA gene	Chr1:40848268-40866895 (+)
A/J	ENSMUSG00195001900	lncRNA gene	Chr1:40555728-40574346 (+)
AKR/J	ENSMUSG00220003761	lncRNA gene	Chr1:40555935-40574572 (+)
BALB/cJ	ENSMUSG00180003482	lncRNA gene	Chr1:40577061-40647597 (+)
C3H/HeJ	ENSMUSG00175000112	lncRNA gene	Chr1:40563458-40582078 (+)
C57BL/6NJ	ENSMUSG00215003015	lncRNA gene	Chr1:40552160-40622710 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005001045	lncRNA gene	Chr1:40630964-40697055 (+)
CBA/J	ENSMUSG00210006161	lncRNA gene	Chr1:40314962-40333586 (+)
DBA/2J	ENSMUSG00185030185	lncRNA gene	Chr1:41416118-41434743 (+)
FVB/NJ	ENSMUSG00205003988	lncRNA gene	Chr1:40508709-40527349 (+)
JF1/MsJ	ENSUMUG00000002018	lncRNA gene	Chr1:40650850-40669197 (+)
LP/J	ENSMUSG00230001179	lncRNA gene	Chr1:41462676-41533219 (+)
NOD/ShiLtJ	ENSMUSG00190002847	lncRNA gene	Chr1:40534585-40553221 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010037116	lncRNA gene	Chr1:40167875-40186227 (+)
SPRET/EiJ	ENSMSPG00010013786	lncRNA gene	Chr1:41731743-41749609 (+)
WSB/EiJ	ENSIUOG00005003852	lncRNA gene	Chr1:40470827-40489456 (+)

Homology

• Gene Tree
  Gm30307
  

Expression

• cDNA Data
  1

• Other Mouse Links
  GEO

Sequences &
Gene Models

• All Sequences
  27

• Ensembl
  ENSMUSG00000120601 (Evidence)
• NCBI Gene
  102632160

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120601	Ensembl Gene Model | MGI Sequence Detail	70619	C57BL/6J
transcript	ENSMUST00000245904	Ensembl | MGI Sequence Detail	2497	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 4
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm30307:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr6524	Chr1:43236154-43236170 (+)	187 bp
Tssr6525	Chr1:43236281-43236288 (+)	310 bp
Tssr6526	Chr1:43244012-43244014 (+)	8,038 bp