Gm30262 Gene Detail

Summary

• Symbol
  Gm30262
• Name
  predicted gene, 30262

• Feature Type
  lncRNA gene
• IDs
  MGI:5589421
  NCBI Gene: 102632099
• Alliance
  genome feature page
• Transcription Start Sites
  7 TSS

Location &
Maps

• Sequence Map
  Chr10:111418952-111447493 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  955 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5589421	lncRNA gene	Chr10:111418375-111455155 (+)
129S1/SvImJ	ENSMUSG00200011207	lncRNA gene	Chr10:107849488-107866176 (+)
A/J	ENSMUSG00195008503	lncRNA gene	Chr10:108264913-108281607 (+)
AKR/J	ENSMUSG00220025483	lncRNA gene	Chr10:107846312-107863006 (+)
BALB/cJ	ENSMUSG00180024907	lncRNA gene	Chr10:108284443-108301133 (+)
C3H/HeJ	ENSMUSG00175016159	lncRNA gene	Chr10:108212830-108229525 (+)
C57BL/6NJ	ENSMUSG00215012191	lncRNA gene	Chr10:107935749-107952461 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005011481	lncRNA gene	Chr10:107310573-107327218 (+)
CBA/J	ENSMUSG00210011765	lncRNA gene	Chr10:108084175-108100873 (+)
DBA/2J	ENSMUSG00185024958	lncRNA gene	Chr10:108212866-108231420 (+)
FVB/NJ	ENSMUSG00205011185	lncRNA gene	Chr10:107713159-107729861 (+)
JF1/MsJ	ENSUMUG00000009822	lncRNA gene	Chr10:109533537-109550169 (+)
LP/J	ENSMUSG00230012945	lncRNA gene	Chr10:110158761-110175452 (+)
NOD/ShiLtJ	ENSMUSG00190021293	lncRNA gene	Chr10:108311874-108328569 (+)
NZO/HlLtJ	ENSMUSG00225017620	lncRNA gene	Chr10:114413055-114429750 (+)
PWK/PhJ	ENSLUMG00010014281	lncRNA gene	Chr10:107915136-107931594 (+)
SPRET/EiJ	ENSMSPG00010005615	lncRNA gene	Chr10:109735204-109752348 (+)
WSB/EiJ	ENSIUOG00005010680	lncRNA gene	Chr10:107985231-108001949 (+)

Homology

• Gene Tree
  Gm30262
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  7 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Gene trapped
  1
• Genomic Mutations
  1 involving Gm30262
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  147
• RefSeq
  12

• Ensembl
  ENSMUSG00000112249 (Evidence)
• NCBI Gene
  102632099

Representative Sequences			Length	Strain/Species
genomic	102632099	NCBI Gene Model | MGI Sequence Detail	28542	C57BL/6J
transcript	XR_872039	RefSeq | MGI Sequence Detail	6626	C57BL/6J

References

• Summaries
  All 10

  Phenotypes 7
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Gm30262:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr95769	Chr10:111430982-111430997 (+)	12,038 bp
Tssr95770	Chr10:111431778-111431785 (+)	12,830 bp
Tssr95771	Chr10:111431797-111431810 (+)	12,852 bp
Tssr95772	Chr10:111431813-111431823 (+)	12,866 bp
Tssr95773	Chr10:111431828-111431840 (+)	12,882 bp
Tssr95774	Chr10:111431863-111431876 (+)	12,918 bp
Tssr95775	Chr10:111444508-111444540 (+)	25,572 bp