Gm30239 Gene Detail

Summary

• Symbol
  Gm30239
• Name
  predicted gene, 30239

• Feature Type
  lncRNA gene
• IDs
  MGI:5589398
  NCBI Gene: 102632068
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr13:12536488-12577609 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1811 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5589398	lncRNA gene	Chr13:12536488-12577609 (+)
129S1/SvImJ	ENSMUSG00200006805	lncRNA gene	Chr13:9805321-9827810 (+)
A/J	ENSMUSG00195013659	lncRNA gene	Chr13:9138092-9160674 (+)
AKR/J	ENSMUSG00220013759	lncRNA gene	Chr13:9395913-9418437 (+)
BALB/cJ	ENSMUSG00180010559	lncRNA gene	Chr13:9565052-9587629 (+)
C3H/HeJ	ENSMUSG00175008757	lncRNA gene	Chr13:9597758-9620331 (+)
C57BL/6NJ	ENSMUSG00215021514	lncRNA gene	Chr13:9861382-9883956 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005024686	lncRNA gene	Chr13:9773408-9796128 (+)
CBA/J	ENSMUSG00210023148	lncRNA gene	Chr13:9119211-9141783 (+)
DBA/2J	ENSMUSG00185024906	lncRNA gene	Chr13:9808328-9830903 (+)
FVB/NJ	ENSMUSG00205029295	lncRNA gene	Chr13:9597707-9620311 (+)
JF1/MsJ	ENSUMUG00000008915	lncRNA gene	Chr13:9847043-9869589 (+)
LP/J	ENSMUSG00230007927	lncRNA gene	Chr13:19295680-19318249 (+)
NOD/ShiLtJ	ENSMUSG00190013177	lncRNA gene	Chr13:9257119-9279695 (+)
NZO/HlLtJ	ENSMUSG00225032780	lncRNA gene	Chr13:13190516-13213114 (+)
PWK/PhJ	ENSLUMG00010017744	lncRNA gene	Chr13:9203420-9225899 (+)
SPRET/EiJ	ENSMSPG00010024201	lncRNA gene	Chr13:9227696-9251257 (+)
WSB/EiJ	ENSIUOG00005022918	lncRNA gene	Chr13:9047797-9070278 (+)

Homology

• Gene Tree
  Gm30239
  

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  32
• RefSeq
  1

• Ensembl
  ENSMUSG00000114115 (Evidence)
• NCBI Gene
  102632068

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000114115	Ensembl Gene Model | MGI Sequence Detail	41122	C57BL/6J
transcript	ENSMUST00000315731	Ensembl | MGI Sequence Detail	1178	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 4
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;