Gm30230 Gene Detail

Summary

• Symbol
  Gm30230
• Name
  predicted gene, 30230

• Feature Type
  lncRNA gene
• IDs
  MGI:5589389
  NCBI Gene: 102632057
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr18:15454166-15479263 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  926 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5589389	lncRNA gene	Chr18:15440979-15479264 (-)
129S1/SvImJ	ENSMUSG00200019827	lncRNA gene	Chr18:12426950-12450782 (-)
A/J	ENSMUSG00195002306	lncRNA gene	Chr18:12590581-12614404 (-)
AKR/J	ENSMUSG00220012132	lncRNA gene	Chr18:12593813-12617638 (-)
BALB/cJ	ENSMUSG00180004139	lncRNA gene	Chr18:13070689-13094529 (-)
C3H/HeJ	ENSMUSG00175004605	lncRNA gene	Chr18:12609800-12633640 (-)
C57BL/6NJ	ENSMUSG00215003749	lncRNA gene	Chr18:12299734-12323570 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005015073	lncRNA gene	Chr18:12434351-12458159 (-)
CBA/J	ENSMUSG00210020537	lncRNA gene	Chr18:12618622-12642461 (-)
DBA/2J	ENSMUSG00185008446	lncRNA gene	Chr18:12597361-12621197 (-)
FVB/NJ	ENSMUSG00205016951	lncRNA gene	Chr18:12359967-12383803 (-)
JF1/MsJ	ENSUMUG00000027506	lncRNA gene	Chr18:12705124-12735158 (-)
LP/J	ENSMUSG00230012554	lncRNA gene	Chr18:14652671-14676497 (-)
NOD/ShiLtJ	ENSMUSG00190017512	lncRNA gene	Chr18:12392449-12416284 (-)
NZO/HlLtJ	ENSMUSG00225028307	lncRNA gene	Chr18:14578905-14602735 (-)
PWK/PhJ	ENSLUMG00010016115	lncRNA gene	Chr18:12927911-12957955 (-)
SPRET/EiJ	ENSMSPG00010004943	lncRNA gene	Chr18:12584447-12613912 (-)
WSB/EiJ	ENSIUOG00005020263	lncRNA gene	Chr18:12479074-12502899 (-)

Homology

• Gene Tree
  Gm30230
  

Sequences &
Gene Models

• All Sequences
  33
• RefSeq
  3

• Ensembl
  ENSMUSG00000119962 (Evidence)
• NCBI Gene
  102632057

Representative Sequences			Length	Strain/Species
genomic	102632057	NCBI Gene Model | MGI Sequence Detail	25098	C57BL/6J
transcript	XR_001782531	RefSeq | MGI Sequence Detail	2113	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm30230:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr152528	Chr18:15479252-15479257 (-)	8 bp
Tssr152527	Chr18:15464914-15464928 (-)	14,342 bp
Tssr152526	Chr18:15464854-15464882 (-)	14,395 bp