Gm30177 Gene Detail

Summary

• Symbol
  Gm30177
• Name
  predicted gene, 30177

• Feature Type
  lncRNA gene
• IDs
  MGI:5589336
  NCBI Gene: 102631989
• Alliance
  genome feature page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr13:36910829-36915276 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  121 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5589336	lncRNA gene	Chr13:36910829-36942852 (+)
129S1/SvImJ	ENSMUSG00200012537	lncRNA gene	Chr13:34114175-34116178 (+)
A/J	ENSMUSG00195034047	lncRNA gene	Chr13:33205619-33207646 (+)
AKR/J	ENSMUSG00220035515	lncRNA gene	Chr13:33000442-33002471 (+)
BALB/cJ	ENSMUSG00180008418	lncRNA gene	Chr13:33511255-33513280 (+)
C3H/HeJ	ENSMUSG00175014934	lncRNA gene	Chr13:33458407-33460432 (+)
C57BL/6NJ	ENSMUSG00215014306	lncRNA gene	Chr13:33636046-33638051 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005038406	lncRNA gene	Chr13:33570729-33572767 (+)
CBA/J	ENSMUSG00210012214	lncRNA gene	Chr13:33470955-33472988 (+)
DBA/2J	ENSMUSG00185032730	lncRNA gene	Chr13:34299071-34301068 (+)
FVB/NJ	ENSMUSG00205037372	lncRNA gene	Chr13:33166350-33168347 (+)
JF1/MsJ	ENSUMUG00000040748	lncRNA gene	Chr13:33900086-33902107 (+)
LP/J	ENSMUSG00230015824	lncRNA gene	Chr13:43614697-43616724 (+)
NOD/ShiLtJ	ENSMUSG00190013268	lncRNA gene	Chr13:33687774-33689769 (+)
NZO/HlLtJ	ENSMUSG00225034705	lncRNA gene	Chr13:37420777-37422769 (+)
PWK/PhJ	ENSLUMG00010028707	lncRNA gene	Chr13:32730212-32732225 (+)
SPRET/EiJ	ENSMSPG00010010685	lncRNA gene	Chr13:32710402-32712448 (+)
WSB/EiJ	ENSIUOG00005030572	lncRNA gene	Chr13:32844296-32846305 (+)

Homology

• Gene Tree
  Gm30177
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm30177
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  1

• Ensembl
  ENSMUSG00000114708 (Evidence)
• NCBI Gene
  102631989

Representative Sequences			Length	Strain/Species
genomic	102631989	NCBI Gene Model | MGI Sequence Detail	4448	C57BL/6J
transcript	XR_382190	RefSeq | MGI Sequence Detail	3025	C57BL/6J

References

• Summaries
  All 6

  Phenotypes 3
• Earliest
  J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69

TSS for Gm30177:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr119267	Chr13:36911298-36911322 (+)	481 bp
Tssr119268	Chr13:36914016-36914029 (+)	3,194 bp
Tssr119269	Chr13:36914042-36914052 (+)	3,218 bp
Tssr119270	Chr13:36914070-36914085 (+)	3,249 bp