Gm30172 Pseudogene Detail

Summary

• Symbol
  Gm30172
• Name
  predicted gene, 30172

• Feature Type
  pseudogene
• IDs
  MGI:5589331
  NCBI Gene: 102631980
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr11:5225262-5225571 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  66 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5589331	pseudogene	Chr11:5222411-5225677 (+)
129S1/SvImJ	ENSMUSG00200034374	pseudogene	Chr11:2179105-2180559 (+)
A/J	ENSMUSG00195024639	pseudogene	Chr11:2086046-2087500 (+)
AKR/J	ENSMUSG00220009144	pseudogene	Chr11:2123513-2124967 (+)
BALB/cJ	ENSMUSG00180028254	pseudogene	Chr11:2109518-2110972 (+)
C3H/HeJ	ENSMUSG00175010758	pseudogene	Chr11:2102225-2103679 (+)
C57BL/6NJ	ENSMUSG00215031925	pseudogene	Chr11:2112772-2114226 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005039448	pseudogene	Chr11:2196262-2197719 (+)
CBA/J	ENSMUSG00210018501	pseudogene	Chr11:2101838-2103292 (+)
DBA/2J	ENSMUSG00185018269	pseudogene	Chr11:2199608-2201062 (+)
FVB/NJ	ENSMUSG00205038253	pseudogene	Chr11:2088726-2090180 (+)
JF1/MsJ	ENSUMUG00000051308	pseudogene	Chr11:2359384-2360837 (+)
LP/J	ENSMUSG00230034858	pseudogene	Chr11:3262196-3263650 (+)
NOD/ShiLtJ	ENSMUSG00190041761	pseudogene	Chr11:2085615-2087069 (+)
NZO/HlLtJ	ENSMUSG00225026065	pseudogene	Chr11:5320420-5321874 (+)
PWK/PhJ	ENSLUMG00010019603	pseudogene	Chr11:2096062-2097516 (+)
SPRET/EiJ	ENSMSPG00010008560	pseudogene	Chr11:2173103-2174557 (+)
WSB/EiJ	ENSIUOG00005007580	pseudogene	Chr11:2106282-2107736 (+)

Homology

• Gene Tree
  Gm30172
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000118486 (Evidence)
• NCBI Gene
  102631980

Representative Sequences			Length	Strain/Species
genomic	102631980	NCBI Gene Model | MGI Sequence Detail	310	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;